Factsheet for PGSC0003DMT400020801

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g069470.1.1	Tomato	cytosol, nucleus, plastid	96.31	96.31
VIT_06s0004g02800.t01	Wine grape	nucleus	85.02	84.72
KRH29910	Soybean	cytosol, nucleus, plastid	81.57	81.47
KRH25015	Soybean	cytosol, nucleus, plastid	80.26	80.26
AT5G60690.1	Thale cress	cytosol, nucleus, plastid	79.31	79.22
CDY31519	Canola	cytosol, nucleus, plastid	79.31	78.47
Bra002458.1-P	Field mustard	cytosol, nucleus, plastid	79.31	78.47
CDY52706	Canola	cytosol, nucleus, plastid	78.95	78.39
CDY09191	Canola	cytosol	67.78	76.51
Bra020236.1-P	Field mustard	nucleus	76.81	76.36
Bra038295.1-P	Field mustard	cytosol, nucleus, plastid	73.25	73.95
CDX99164	Canola	cytosol, nucleus, plastid	73.72	73.9
CDY31032	Canola	cytosol	64.8	71.15
HORVU5Hr1G061410.29	Barley	cytosol	24.26	70.59
GSMUA_Achr5P18530_001	Banana	cytosol, nucleus, plastid	69.44	70.02
HORVU1Hr1G041790.2	Barley	nucleus	69.68	69.76
TraesCS1B01G173900.1	Wheat	nucleus	69.56	69.64
TraesCS1A01G157500.1	Wheat	nucleus	69.56	69.64
Os10t0480200-01	Rice	nucleus	69.44	69.52
TraesCS1D01G155200.3	Wheat	nucleus	68.97	69.21
Os03t0109400-02	Rice	nucleus	68.37	68.53
OQU93425	Sorghum	nucleus	68.25	68.17
EER94065	Sorghum	nucleus	67.66	67.9
PGSC0003DMT400030829	Potato	cytosol, nucleus, plastid	68.73	67.84
Zm00001d048527_P028	Maize	nucleus	67.78	67.38
PGSC0003DMT400074932	Potato	nucleus	42.21	67.23
Zm00001d027317_P015	Maize	nucleus	67.9	66.94
TraesCS4D01G359600.1	Wheat	nucleus	66.59	66.83
TraesCS5A01G549700.1	Wheat	nucleus	66.47	66.71
HORVU4Hr1G090030.9	Barley	nucleus	66.35	66.59
PGSC0003DMT400006735	Potato	cytosol	66.11	66.59
TraesCS4B01G385200.1	Wheat	nucleus	66.35	66.51
CDY31031	Canola	extracellular	8.44	66.36
PGSC0003DMT400054421	Potato	cytosol, nucleus, plastid	65.64	66.11
PGSC0003DMT400074934	Potato	cytosol	65.28	65.44
PGSC0003DMT400068037	Potato	cytosol	64.45	64.76
Zm00001d032681_P004	Maize	cytosol, nucleus, plastid	65.52	63.19
CDY27014	Canola	cytosol, plasma membrane	5.59	62.67
CDY57624	Canola	extracellular	6.78	61.29
Zm00001d049529_P001	Maize	cytosol, plastid	12.37	54.74
CDX82038	Canola	extracellular	8.68	45.06
Os03t0769800-01	Rice	plastid	4.52	15.7
Os10t0147300-02	Rice	plastid	1.07	8.26

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102588628	MapMan:15.5.3.2	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0008289	GO:GO:0009653	GO:GO:0009855
GO:GO:0009944	GO:GO:0009956	GO:GO:0009987	GO:GO:0010014	GO:GO:0010051	GO:GO:0010089
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR002913	InterPro:IPR023393	UniProt:M1AE39	InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852
PFAM:PF08670	EnsemblPlantsGene:PGSC0003DMG401008054	PGSC:PGSC0003DMG401008054	EnsemblPlants:PGSC0003DMT400020801	PFscan:PS50071	PFscan:PS50848
PANTHER:PTHR24326	PANTHER:PTHR24326:SF279	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961
InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI0002961DA9	RefSeq:XP_006340193.1	SEG:seg	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG401008054]

Coordinates

chr11:-:41615124..41622072

Molecular Weight (calculated)

92209.4 Da

IEP (calculated)

6.055

GRAVY (calculated)

-0.106

Length

841 amino acids

Sequence
(BLAST)

001: MAMVAQQHRE SSSGSITKHL DSSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECH ILSNIEPKQI KVWFQNRRCR EKQRKESSRL QTVNRKLSAM
101: NKLLMEENDR LQKQVSQLVC ENGYMRQQLQ SVSAATTDVS CESVVTTPQH SLRDANNPAG LLPIAEETLA EFLSKATGTA VDWVPMPGMK PGPDSVGIFA
201: ISHSCSGVAA RACGLVSLEP TKIAEILKDR PSWFRDCRNV EVITIFPAGN GGTVELLYTQ IYAPTTLAPA RDLWTLRYTT TLDNGSLVVC ERSLSGNGPG
301: PNPAAASQFV RAQMLPSGYL IRPCDGGGSI IHIVDHLNLE AWSAPEILRP LYESSKVVAQ KMTIAALRYA RQLAQETSGE VVYGLGRQPA VLRTFSQRLC
401: RGFNDAINGF GDDGWSMLSS DGAEDVIVAV NSRKNLATTS VPLSSLGGIL CAKASMLLQN VPPAVLVRFL REHRSEWADF NVDAFVASAL KSCPYTYPGM
501: RPTRFTGSQI IMPLGHTIEH EEMLEVIRLE GHSIGQEDAF MPRDIHLLQM CSGTDENAVG ACSELVFAPI DEMFPDDAPL LPSGFRIIPL ESKSGDAQDT
601: LNAHRTLDLA SSLEVGPARN SATGDMASCY SARSVLTIAF QFPFEDNLQD NVATMARQYV RSVVSSVQRV AMAISPTGMN PTLGAKLSPG SPEAVTLSHW
701: ICQSYSYHMG TELLRADSSG DESVLKNLWQ HQDAILCCSL KSLPVFIFAN KAGLDMLETT LVALQDISLD KIFDEPGREV LLSEFAKIME QGFACLPGGI
801: CMSTMGRHIS YEQAIAWKVF ASSEENAVHC LAFSFINWSF V

Best Arabidopsis Sequence Match ( AT5G60690.1 )
(BLAST)

001: MEMAVANHRE RSSDSMNRHL DSSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECS ILANIEPKQI KVWFQNRRCR DKQRKEASRL QSVNRKLSAM
101: NKLLMEENDR LQKQVSQLVC ENGYMKQQLT TVVNDPSCES VVTTPQHSLR DANSPAGLLS IAEETLAEFL SKATGTAVDW VQMPGMKPGP DSVGIFAISQ
201: RCNGVAARAC GLVSLEPMKI AEILKDRPSW FRDCRSLEVF TMFPAGNGGT IELVYMQTYA PTTLAPARDF WTLRYTTSLD NGSFVVCERS LSGSGAGPNA
301: ASASQFVRAE MLSSGYLIRP CDGGGSIIHI VDHLNLEAWS VPDVLRPLYE SSKVVAQKMT ISALRYIRQL AQESNGEVVY GLGRQPAVLR TFSQRLSRGF
401: NDAVNGFGDD GWSTMHCDGA EDIIVAINST KHLNNISNSL SFLGGVLCAK ASMLLQNVPP AVLIRFLREH RSEWADFNVD AYSAATLKAG SFAYPGMRPT
501: RFTGSQIIMP LGHTIEHEEM LEVVRLEGHS LAQEDAFMSR DVHLLQICTG IDENAVGACS ELIFAPINEM FPDDAPLVPS GFRVIPVDAK TGDVQDLLTA
601: NHRTLDLTSS LEVGPSPENA SGNSFSSSSS RCILTIAFQF PFENNLQENV AGMACQYVRS VISSVQRVAM AISPSGISPS LGSKLSPGSP EAVTLAQWIS
701: QSYSHHLGSE LLTIDSLGSD DSVLKLLWDH QDAILCCSLK PQPVFMFANQ AGLDMLETTL VALQDITLEK IFDESGRKAI CSDFAKLMQQ GFACLPSGIC
801: VSTMGRHVSY EQAVAWKVFA ASEENNNNLH CLAFSFVNWS FV

Arabidopsis Description

REVHomeobox-leucine zipper protein REVOLUTA [Source:UniProtKB/Swiss-Prot;Acc:Q9SE43]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.