Factsheet for TraesCS1D01G155200.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G157500.1	Wheat	nucleus	99.16	98.93
TraesCS1B01G173900.1	Wheat	nucleus	99.05	98.81
HORVU1Hr1G041790.2	Barley	nucleus	98.81	98.57
Os10t0480200-01	Rice	nucleus	91.65	91.43
EER94065	Sorghum	nucleus	87.23	87.23
TraesCS4D01G359600.1	Wheat	nucleus	82.34	82.34
Zm00001d032681_P004	Maize	cytosol, nucleus, plastid	82.1	78.9
GSMUA_Achr5P18530_001	Banana	cytosol, nucleus, plastid	76.13	76.5
VIT_06s0004g02800.t01	Wine grape	nucleus	71.24	70.73
KRH29910	Soybean	cytosol, nucleus, plastid	70.88	70.55
KRH25015	Soybean	cytosol, nucleus, plastid	69.93	69.68
Solyc11g069470.1.1	Tomato	cytosol, nucleus, plastid	69.81	69.56
PGSC0003DMT400020801	Potato	cytosol, nucleus, plastid	69.21	68.97
CDY52706	Canola	cytosol, nucleus, plastid	69.45	68.71
AT5G60690.1	Thale cress	cytosol, nucleus, plastid	68.85	68.53
Bra002458.1-P	Field mustard	cytosol, nucleus, plastid	69.09	68.12
CDY31519	Canola	cytosol, nucleus, plastid	69.09	68.12
Bra038295.1-P	Field mustard	cytosol, nucleus, plastid	66.59	66.99
CDX99164	Canola	cytosol, nucleus, plastid	66.95	66.87
Bra020236.1-P	Field mustard	nucleus	67.06	66.43
TraesCS5D01G385300.1	Wheat	cytosol, nucleus, plastid	68.02	66.13
CDY09191	Canola	cytosol	58.71	66.04
VIT_13s0019g04320.t01	Wine grape	nucleus	64.08	63.85
CDY31032	Canola	cytosol	58.23	63.71
TraesCS5D01G052300.1	Wheat	mitochondrion, plastid	64.92	61.61
CDY27014	Canola	cytosol, plasma membrane	5.37	60.0
CDY31031	Canola	extracellular	7.4	57.94
CDY57624	Canola	extracellular	6.21	55.91
TraesCS3D01G141500.2	Wheat	nucleus	57.88	54.99
CDX82038	Canola	extracellular	8.11	41.98

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR002913	InterPro:IPR023393	InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670
PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF326	SMART:SM00234	SMART:SM00389
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	EnsemblPlantsGene:TraesCS1D01G155200	EnsemblPlants:TraesCS1D01G155200.3
TIGR:cd00086	TIGR:cd08875	TIGR:cd14686	SEG:seg	:	:

Description

No Description!

Coordinates

chr1D:+:217636182..217644644

Molecular Weight (calculated)

91901.1 Da

IEP (calculated)

5.824

GRAVY (calculated)

-0.120

Length

838 amino acids

Sequence
(BLAST)

001: MAAVAAMRCG SGSGSDGGGG GYDKGGMDSG KYVRYTPEQV EALERVYAEC PKPTSTRRQQ LLRECPILSN IEPRQIKVWF QNRRCRDKQR KESSRLQAVN
101: RKLSAMNKLL MEENERLQKQ VSQLVHENAY MKQQLQNPSL ANDTSCESNV TTPNPLRDAS NPAGLLAIAE ETLTEFLSKA TGTAVDWVPM PGMKPGPDSF
201: GIVAVSHGCR GVAARACGLV NLEPTKIVEI LKDRPSWFRD CRSLEVFTML PAGNGGTIEL VYMQMYAPTT LVPARDFWTL RYTTTMEDGS LVVCERSLSG
301: SGGGPSTASA QQFVRAEMLP SGYLVRPCDG GGSIVHIVDH LDLEAWSVPE VLRPLYESSR VVAQKMTTAA LRHIRQIAQE TSGEVVYALG RQPAVLRTFS
401: QRLSRGFNDA ISGFNDDGWS VMAGDGIEDV IIACNSKKIR SNNTAPNAFI APGGVICAKA SMLLQSVPPA VLVRFLREHR SEWADYNFDA YSASALKSSS
501: CSLPGLRPMR FSGSQIIMPL AHTVENEEIL EVVRLEGQAL DEGLLSRDIH LLQFCTGLDE KSMGSCFQLV FAPIDELFPD DAPLISSGFR VIPLDMKTDG
601: APAGRTLDLA SSLEAGSTTL QASGGADDCN LRSVLTIAFQ FPYEMHLQDS VATMARQYVR SIVSAVQRVS MAISPSRSGL NAEHKIISGF PEAATLARWI
701: CQSYRFHLGV ELFRQADEAG ESLLRMLWDH EDAILCCSFK EKPVFTFANE MGINMLETSF VALQDLSLDK IFDEAGRKAL YSEIPKLMEQ GFVYLPGGVC
801: LSGMGRHVSF ENAVAWKVVG EDNNVHCLAF CFVNWSFV

Best Arabidopsis Sequence Match ( AT1G30490.1 )
(BLAST)

001: MMAHHSMDDR DSPDKGFDSG KYVRYTPEQV EALERVYAEC PKPSSLRRQQ LIRECPILCN IEPRQIKVWF QNRRCREKQR KESARLQTVN RKLSAMNKLL
101: MEENDRLQKQ VSNLVYENGF MKHRIHTASG TTTDNSCESV VVSGQQRQQQ NPTHQHPQRD VNNPANLLSI AEETLAEFLC KATGTAVDWV QMIGMKPGPD
201: SIGIVAVSRN CSGIAARACG LVSLEPMKVA EILKDRPSWF RDCRCVETLN VIPTGNGGTI ELVNTQIYAP TTLAAARDFW TLRYSTSLED GSYVVCERSL
301: TSATGGPNGP LSSSFVRAKM LSSGFLIRPC DGGGSIIHIV DHVDLDVSSV PEVLRPLYES SKILAQKMTV AALRHVRQIA QETSGEVQYS GGRQPAVLRT
401: FSQRLCRGFN DAVNGFVDDG WSPMSSDGGE DITIMINSSS AKFAGSQYGS SFLPSFGSGV LCAKASMLLQ NVPPLVLIRF LREHRAEWAD YGVDAYSAAS
501: LRATPYAVPC VRTGGFPSNQ VILPLAQTLE HEEFLEVVRL GGHAYSPEDM GLSRDMYLLQ LCSGVDENVV GGCAQLVFAP IDESFADDAP LLPSGFRVIP
601: LDQKTNPNDH QSASRTRDLA SSLDGSTKTD SETNSRLVLT IAFQFTFDNH SRDNVATMAR QYVRNVVGSI QRVALAITPR PGSMQLPTSP EALTLVRWIT
701: RSYSIHTGAD LFGADSQSCG GDTLLKQLWD HSDAILCCSL KTNASPVFTF ANQAGLDMLE TTLVALQDIM LDKTLDDSGR RALCSEFAKI MQQGYANLPA
801: GICVSSMGRP VSYEQATVWK VVDDNESNHC LAFTLVSWSF V

Arabidopsis Description

ATHB-9Homeobox-leucine zipper protein ATHB-9 [Source:UniProtKB/Swiss-Prot;Acc:O04292]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.