Factsheet for TraesCS3D01G141500.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G492200.1
TraesCS2B01G520300.1
TraesCS2D01G492400.1
TraesCS5A01G290100.2
TraesCS5B01G289100.1
TraesCS5D01G297600.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32880.1	TraesCS2A01G492200.1	AT3G51180.1	21798944
AT4G32880.1	TraesCS2B01G520300.1	AT3G51180.1	21798944
AT4G32880.1	TraesCS2D01G492400.1	AT3G51180.1	21798944
AT4G32880.1	TraesCS5A01G290100.2	AT5G41070.1	21798944
AT4G32880.1	TraesCS5B01G289100.1	AT5G41070.1	21798944
AT4G32880.1	TraesCS5D01G297600.2	AT5G41070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G159100.2	Wheat	cytosol, nucleus, plastid	93.99	94.63
HORVU3Hr1G026990.3	Barley	cytosol, nucleus, plastid	89.57	93.49
TraesCS3A01G312800.1	Wheat	nucleus	91.27	92.11
EES00115	Sorghum	cytosol, nucleus, plastid	79.59	83.18
Os06t0722650-01	Rice	extracellular, mitochondrion, plastid	14.29	81.29
Os06t0722300-01	Rice	extracellular, mitochondrion, plastid	14.29	81.29
Os06t0720500-01	Rice	extracellular, mitochondrion, plastid	14.29	81.29
Zm00001d008869_P001	Maize	cytosol	76.53	78.67
Os01t0200300-01	Rice	cytosol, peroxisome	36.62	74.94
PGSC0003DMT400074932	Potato	nucleus	41.95	70.08
Solyc08g066500.2.1	Tomato	cytosol	63.49	67.71
GSMUA_Achr5P06550_001	Banana	cytosol	64.17	67.46
VIT_09s0002g03740.t01	Wine grape	cytosol	64.29	67.42
PGSC0003DMT400006735	Potato	cytosol	63.49	67.07
Solyc03g120910.2.1	Tomato	cytosol	63.49	66.99
GSMUA_Achr8P20090_001	Banana	cytosol	63.49	66.83
VIT_04s0008g03250.t01	Wine grape	cytosol	63.95	66.35
PGSC0003DMT400074934	Potato	cytosol	62.7	65.91
CDY60592	Canola	cytosol	62.59	65.87
CDY02553	Canola	cytosol	62.36	65.87
AT1G52150.2	Thale cress	cytosol	62.47	65.83
CDY51188	Canola	nucleus	53.74	65.74
Bra014315.1-P	Field mustard	cytosol	62.02	65.59
CDY69514	Canola	nucleus	46.83	65.56
Bra018948.1-P	Field mustard	cytosol	62.24	65.51
CDY47819	Canola	cytosol	62.24	65.51
Solyc12g044410.1.1	Tomato	nucleus	61.79	65.11
PGSC0003DMT400068037	Potato	cytosol	61.79	65.11
CDY45021	Canola	nucleus	53.63	64.09
CDY28273	Canola	nucleus	53.51	63.96
AT4G32880.1	Thale cress	nucleus	59.98	63.51
Bra034539.1-P	Field mustard	nucleus	59.75	63.34
Bra011392.1-P	Field mustard	cytosol	59.75	63.27
TraesCS5D01G385300.1	Wheat	cytosol, nucleus, plastid	57.82	59.16
TraesCS1D01G155200.3	Wheat	nucleus	54.99	57.88
TraesCS4D01G359600.1	Wheat	nucleus	53.74	56.56
TraesCS5D01G052300.1	Wheat	mitochondrion, plastid	56.24	56.17
CDX68901	Canola	plastid	12.81	55.94
Bra030088.1-P	Field mustard	mitochondrion	7.6	54.92
KRH33388	Soybean	cytosol	4.2	35.58

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR002913	InterPro:IPR023393	InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670
PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF217	SMART:SM00234	SMART:SM00389
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	EnsemblPlantsGene:TraesCS3D01G141500	EnsemblPlants:TraesCS3D01G141500.2
TIGR:cd00086	TIGR:cd08875	TIGR:cd14686	SEG:seg	:	:

Description

No Description!

Coordinates

chr3D:+:103645450..103649526

Molecular Weight (calculated)

95724.2 Da

IEP (calculated)

6.594

GRAVY (calculated)

-0.064

Length

882 amino acids

Sequence
(BLAST)

001: MVTAREAREA AAAAMDASKY VRYTPEQVEA LERLYYECPK PSSLRRQQLV RECAVLANVD PKQIKVWFQN RRCREKQRKE SGRLQSLNRK LTAMNKLLME
101: ENDRLQKQVS HLVYQNGYYR QQTHSVRTPP PPPPATMSPP PLRPPRAHAF TPPPPPLPLP LQAGLATTDT SCESVVTSGQ QNVVVVVPPP PRDASPAGLM
201: SIAEETLTEF LSKATGTAVE WVQMPGMKPG PDSIGIIAIS HGCAGVAARA CGLVGMEPAK VAEILKDRPL WLRDCRSMEV VNVLPAGSNG TIELLYMQLY
301: APTTLAPARD FWLMRYTSIL DDGSLVVCER SLSSKQGGPS MPLVQPFVRG EMLPSGFLIR PSDGGGSVIH IVDHLDLEPW SVPEVVRPLY ESSAMVAQKM
401: SMAALRYLRQ VAHEDTHSVI TGWGRQPAAL RALSQKLTRG LNETLGGLAD DGWSVIESDG VDDVCISVNS SPSKVMSCTA TFSDGLPMVS TGVLCAKASM
501: LLQDVSPPSL LRFLREHRSQ WADSSLDAFF ASALKPNFSN LPMSRLGGFS GQVILPLAHT SDPEEFLEVI KIGNASNYQD TLMHRDLFLL QMYNGIDENT
601: MGTCSELIFA PIDASFGDDS PLLPSGFRII PMESPLDTSS PNCTLDLAST LEVGTPGSRI PGHSRSSSKA VMTIAFQFAF ESHLQDSVAA MARQYMRSII
701: SSVQRIALAL SSSHLVPHGS SRLLPSVTPE AATLSRWIVQ SYRFHFGAEL IKAADASSGE SALKALWQHT SAILCCSLKA MPVLTFANQS GLDMLETTLA
801: ALREITMDKV LDYDQGRKSL LCADLMASVA EQGYACVEGG TCASSMGRPA SYGKAVAWKV LDDGGAGAAH CVCFAFMDWS FV

Best Arabidopsis Sequence Match ( AT1G52150.1 )
(BLAST)

001: MAMSCKDGKL GCLDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN
101: DRLQKQVSQL VHENSYFRQH TPNPSLPAKD TSCESVVTSG QHQLASQNPQ RDASPAGLLS IAEETLAEFL SKATGTAVEW VQMPGMKPGP DSIGIIAISH
201: GCTGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVEVM NVLPTANGGT VELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKSTQNGPSM
301: PLVQNFVRAE MLSSGYLIRP CDGGGSIIHI VDHMDLEACS VPEVLRPLYE SPKVLAQKTT MAALRQLKQI AQEVTQTNSS VNGWGRRPAA LRALSQRLSR
401: GFNEAVNGFT DEGWSVIGDS MDDVTITVNS SPDKLMGLNL TFANGFAPVS NVVLCAKASM LLQNVPPAIL LRFLREHRSE WADNNIDAYL AAAVKVGPCS
501: ARVGGFGGQV ILPLAHTIEH EEFMEVIKLE GLGHSPEDAI VPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSAKEVSSPN
601: RTLDLASALE IGSAGTKAST DQSGNSTCAR SVMTIAFEFG IESHMQEHVA SMARQYVRGI ISSVQRVALA LSPSHISSQV GLRTPLGTPE AQTLARWICQ
701: SYRGYMGVEL LKSNSDGNES ILKNLWHHTD AIICCSMKAL PVFTFANQAG LDMLETTLVA LQDISLEKIF DDNGRKTLCS EFPQIMQQGF ACLQGGICLS
801: SMGRPVSYER AVAWKVLNEE ENAHCICFVF INWSFV

Arabidopsis Description

ATHB-15Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H4G8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.