Factsheet for PGSC0003DMT400006735

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g120910.2.1	Tomato	cytosol	99.52	99.4
PGSC0003DMT400068037	Potato	cytosol	87.43	87.22
VIT_09s0002g03740.t01	Wine grape	cytosol	86.83	86.21
KRH47223	Soybean	nucleus	85.39	85.08
KRH44288	Soybean	nucleus	85.03	84.73
AT1G52150.2	Thale cress	cytosol	83.95	83.75
KRH47225	Soybean	cytosol	84.07	83.47
CDY47819	Canola	cytosol	83.71	83.41
CDY60592	Canola	cytosol	83.71	83.41
Bra018948.1-P	Field mustard	cytosol	83.47	83.17
CDY02553	Canola	cytosol	83.11	83.11
Bra014315.1-P	Field mustard	cytosol	82.52	82.61
KRH58026	Soybean	cytosol	23.23	82.55
PGSC0003DMT400074932	Potato	nucleus	51.74	81.82
KRH44292	Soybean	cytosol	82.28	80.82
CDY51188	Canola	nucleus	69.22	80.17
PGSC0003DMT400074934	Potato	cytosol	80.12	79.74
GSMUA_Achr8P20090_001	Banana	cytosol	74.25	73.99
GSMUA_Achr5P06550_001	Banana	cytosol	74.13	73.78
EES00115	Sorghum	cytosol, nucleus, plastid	68.26	67.54
HORVU3Hr1G026990.3	Barley	cytosol, nucleus, plastid	67.43	66.63
PGSC0003DMT400020801	Potato	cytosol, nucleus, plastid	66.59	66.11
PGSC0003DMT400030829	Potato	cytosol, nucleus, plastid	66.95	65.61
Zm00001d008869_P001	Maize	cytosol	67.31	65.5
Os06t0722650-01	Rice	extracellular, mitochondrion, plastid	11.98	64.52
Os06t0722300-01	Rice	extracellular, mitochondrion, plastid	11.98	64.52
Os06t0720500-01	Rice	extracellular, mitochondrion, plastid	11.98	64.52
TraesCS3A01G312800.1	Wheat	nucleus	67.07	64.07
PGSC0003DMT400054421	Potato	cytosol, nucleus, plastid	63.95	63.95
TraesCS3D01G141500.2	Wheat	nucleus	67.07	63.49
TraesCS3B01G159100.2	Wheat	cytosol, nucleus, plastid	66.59	63.47
Os01t0200300-01	Rice	cytosol, peroxisome	30.54	59.16
Bra030088.1-P	Field mustard	mitochondrion	8.5	58.2
Zm00001d014252_P002	Maize	cytosol	8.74	41.95

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102580476	MapMan:15.5.3.2	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913
InterPro:IPR023393	UniProt:M0ZRW9	InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670
EnsemblPlantsGene:PGSC0003DMG400002616	PGSC:PGSC0003DMG400002616	EnsemblPlants:PGSC0003DMT400006735	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326
PANTHER:PTHR24326:SF217	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf
InterPro:START_lipid-bd_dom	UniParc:UPI0002958B98	RefSeq:XP_006343047.1	SEG:seg	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002616]

Coordinates

chr3:+:60248018..60255671

Molecular Weight (calculated)

91886.4 Da

IEP (calculated)

6.467

GRAVY (calculated)

-0.136

Length

835 amino acids

Sequence
(BLAST)

001: MASCKDGKSV LDNGKYVRYT PEQVEALERL YHDCPKPSSM RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QSVNRKLTAM NKLLMEENDR
101: LQKQVSQLVY ENGYFRRQSH STPLATKDTS CDSVVTSGQH HLTSQHPPRD ASPAGLLSIA EETLTEFLSK ATGTAVEWVQ MPGMKPGPDS IGIIAISHGC
201: TGVAARACGL VGLEPTRVSE ILKDRPSWYR DCRVVEVLNV LPTANGGTIE LLYMQLYAPT TLAPARDFWL LRYTTVMDDG SLVVCERSLG NTQNGPSMPP
301: VQNFVRAEIL PSGYLIRPCE GGGSIIHIVD HMNLEAWSVP EVLRPLYESS AVLAQKTTVA ALRYLRQIAQ EVSQTNVTNW GRRPAALRAL SQRLSRGFNE
401: ALNGIADEGW SMLDSDGMDD VTILVNSSPD KLMGLNLPFA NGFSPMSNAV MCAKASMLLQ NVPPAILLRF LREHRSEWAD NNIDAYAAAA IKVGPCSLPG
501: ARVGNFGGQV ILPLAHTVEH EELLEVIKLE GHSPEDAIMP RDMFLLQLCS GMDENAVGTC AELVFAPIDA SFADDAPLLP SGFRIISLES GKEASSPNRT
601: LDLTSALETG PAENKAANDL HTSGGSSRSV MTIAFQFAFE SHMQESVASM ARQYVRSIIS SVQRVALALS PSHLGSHGGL RLPLGTPEAH TLARWICQSY
701: RCFLGVELLK SNTDQGSESI LKSLWHHSDA IICCSAKALP VFTFANQAGL DMLETTLVAL QDITLEKIFD DHGKKNLCTE FPQIMQQGFA CLQGGICLSS
801: MSRPISYERA VAWKVMNEED TAHCICFMFV NWSFV

Best Arabidopsis Sequence Match ( AT1G52150.1 )
(BLAST)

001: MAMSCKDGKL GCLDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN
101: DRLQKQVSQL VHENSYFRQH TPNPSLPAKD TSCESVVTSG QHQLASQNPQ RDASPAGLLS IAEETLAEFL SKATGTAVEW VQMPGMKPGP DSIGIIAISH
201: GCTGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVEVM NVLPTANGGT VELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKSTQNGPSM
301: PLVQNFVRAE MLSSGYLIRP CDGGGSIIHI VDHMDLEACS VPEVLRPLYE SPKVLAQKTT MAALRQLKQI AQEVTQTNSS VNGWGRRPAA LRALSQRLSR
401: GFNEAVNGFT DEGWSVIGDS MDDVTITVNS SPDKLMGLNL TFANGFAPVS NVVLCAKASM LLQNVPPAIL LRFLREHRSE WADNNIDAYL AAAVKVGPCS
501: ARVGGFGGQV ILPLAHTIEH EEFMEVIKLE GLGHSPEDAI VPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSAKEVSSPN
601: RTLDLASALE IGSAGTKAST DQSGNSTCAR SVMTIAFEFG IESHMQEHVA SMARQYVRGI ISSVQRVALA LSPSHISSQV GLRTPLGTPE AQTLARWICQ
701: SYRGYMGVEL LKSNSDGNES ILKNLWHHTD AIICCSMKAL PVFTFANQAG LDMLETTLVA LQDISLEKIF DDNGRKTLCS EFPQIMQQGF ACLQGGICLS
801: SMGRPVSYER AVAWKVLNEE ENAHCICFVF INWSFV

Arabidopsis Description

ATHB-15Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H4G8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.