CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47223	Soybean	nucleus	92.71	94.03
KRH47225	Soybean	cytosol	92.94	93.94
KRH44288	Soybean	nucleus	92.59	93.91
KRH58026	Soybean	cytosol	24.59	88.94
VIT_09s0002g03740.t01	Wine grape	cytosol	84.59	85.49
AT1G52150.2	Thale cress	cytosol	81.29	82.56
CDY60592	Canola	cytosol	81.29	82.46
CDY02553	Canola	cytosol	80.94	82.4
PGSC0003DMT400006735	Potato	cytosol	80.82	82.28
Solyc03g120910.2.1	Tomato	cytosol	80.82	82.18
Bra014315.1-P	Field mustard	cytosol	80.59	82.13
CDY47819	Canola	cytosol	80.94	82.1
Bra018948.1-P	Field mustard	cytosol	80.94	82.1
Solyc12g044410.1.1	Tomato	nucleus	78.94	80.17
PGSC0003DMT400068037	Potato	cytosol	78.82	80.05
CDY51188	Canola	nucleus	67.29	79.33
KRH62081	Soybean	cytosol	76.94	77.49
KRH52763	Soybean	cytosol	76.94	77.4
KRH11775	Soybean	cytosol, nucleus, plastid	65.06	65.37
KRH36781	Soybean	cytosol, nucleus, plastid	65.18	65.02
KRH29910	Soybean	cytosol, nucleus, plastid	62.71	63.3
Bra030088.1-P	Field mustard	mitochondrion	9.06	63.11
KRH25015	Soybean	cytosol, nucleus, plastid	62.12	62.78
KRH43001	Soybean	cytosol	62.24	62.31
KRH59117	Soybean	cytosol	62.24	62.02
KRH33388	Soybean	cytosol	4.94	40.38

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100800697	MapMan:15.5.3.2	Gene3D:3.30.530.20	UniProt:A0A0R0IXB3	EMBL:ACUP02004926
ncoils:Coil	EnsemblPlantsGene:GLYMA_08G202000	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	EnsemblPlants:KRH44292	ProteinID:KRH44292
ProteinID:KRH44292.1	InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670	PFscan:PS50071
PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF217	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689
SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI0006EDEB6A	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:-:16374989..16383344

Molecular Weight (calculated)

94103.9 Da

IEP (calculated)

6.666

GRAVY (calculated)

-0.177

Length

850 amino acids

Sequence
(BLAST)

001: MSCKDGSRNG IGIGMDNGKY VRYTPEQVEA LERLYHDCPK PSSIRRLQLI RECPTLSHID PKQIKVWFQN RRCREKQRKE SSRLQAVNRK LTAMNKLLME
101: EIDRLQKQVS QLVYENGYFR QHTTQNTKQQ AIKDTSCESA VRSGQQHNLI TQHPPRDASP AGLLSIAEET LEEFLSKATG TAVEWVQMPG MKPGPDSIGI
201: VAISHGCNGV AARACGLVGL EPTRVAEILK DRPLWFRDCR AVDVLNVLPT ANGGTIELLY MQLYAPTTLA PARDFWLLRY TSVLEDSSLV ICERSLKNTQ
301: NGPSMPPVQH FVRAEMLPSG YLIRPCEGGG SIIHIVDHMN LEPWSVPEVL RPLYESSKVL SQKTTMAALR HLRQISHEVS PSNVSGWGRR PSALRALSQR
401: LSRLIYSTKG GFNEALNGFT DEGWTTIGND GVDDVTILVN SSPDKLMGLN LSFANGFPSV SNAVLCAKAS MLLQNVHPAI LLRFLREHRS EWADNNMDAY
501: TAAAIKVGPC SFSGSRVGNY GGQVILPLAH TIEHEEFLEV IKLEGVAHSP DDTIMPREMF LLQLCSGMDE NAVGTCAELI SAPIDASFAD DAPLLPSGFR
601: IIPLESGKEA SSPNRTLDLA SSLDVGPSGN RASDECAGNS SYMRSVMTIA FEFAFESHMQ EHVAAMARQY VRSIISSVQR VGLALSPSHL SSHAGLRSPL
701: GTPEAQTLAH WICNSYRCYL GVELLKSNNE GNESLLKSLW HHSDAILCCT LKALPVFTFS NQAGLDMLET TLVALQDIPL EKIFDDHERK ILFSEFPQII
801: QQGFACLQGG ICLSSMGRPV SYERVVAWKV LNEEENAHCI CFMFMNWSFV

Best Arabidopsis Sequence Match ( AT1G52150.1 )
(BLAST)

001: MAMSCKDGKL GCLDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN
101: DRLQKQVSQL VHENSYFRQH TPNPSLPAKD TSCESVVTSG QHQLASQNPQ RDASPAGLLS IAEETLAEFL SKATGTAVEW VQMPGMKPGP DSIGIIAISH
201: GCTGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVEVM NVLPTANGGT VELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKSTQNGPSM
301: PLVQNFVRAE MLSSGYLIRP CDGGGSIIHI VDHMDLEACS VPEVLRPLYE SPKVLAQKTT MAALRQLKQI AQEVTQTNSS VNGWGRRPAA LRALSQRLSR
401: GFNEAVNGFT DEGWSVIGDS MDDVTITVNS SPDKLMGLNL TFANGFAPVS NVVLCAKASM LLQNVPPAIL LRFLREHRSE WADNNIDAYL AAAVKVGPCS
501: ARVGGFGGQV ILPLAHTIEH EEFMEVIKLE GLGHSPEDAI VPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSAKEVSSPN
601: RTLDLASALE IGSAGTKAST DQSGNSTCAR SVMTIAFEFG IESHMQEHVA SMARQYVRGI ISSVQRVALA LSPSHISSQV GLRTPLGTPE AQTLARWICQ
701: SYRGYMGVEL LKSNSDGNES ILKNLWHHTD AIICCSMKAL PVFTFANQAG LDMLETTLVA LQDISLEKIF DDNGRKTLCS EFPQIMQQGF ACLQGGICLS
801: SMGRPVSYER AVAWKVLNEE ENAHCICFVF INWSFV

Arabidopsis Description

ATHB-15Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H4G8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.