CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99434
KRH20417
KRH28776
KRH45585
KRH50082
KRH69639
KRH74517
KRH76680

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30490.1	KRG99434	AT1G24590.1	17376809
AT1G30490.1	KRH45585	AT1G24590.1	17376809
AT1G30490.1	KRH69639	AT1G24590.1	17376809
AT1G30490.1	KRH74517	AT1G24590.1	17376809
AT1G30490.1	KRH20417	AT3G45610.1	21245844
AT1G30490.1	KRH50082	AT3G45610.1	21245844
AT2G34710.1	KRH28776	AT2G18060.1	21245844
AT2G34710.1	KRH76680	AT2G18060.1	21245844
AT2G34710.1	KRH20417	AT3G45610.1	21245844
AT2G34710.1	KRH50082	AT3G45610.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43001	Soybean	cytosol	92.38	92.82
KRH36781	Soybean	cytosol, nucleus, plastid	84.76	84.86
KRH11775	Soybean	cytosol, nucleus, plastid	83.82	84.52
VIT_10s0003g04670.t01	Wine grape	cytosol, nucleus, plastid	81.59	82.37
PGSC0003DMT400030829	Potato	cytosol, nucleus, plastid	79.95	80.05
Solyc02g024070.2.1	Tomato	cytosol, nucleus, plastid	78.78	78.97
PGSC0003DMT400054421	Potato	cytosol, nucleus, plastid	74.56	76.17
Solyc02g069830.2.1	Tomato	nucleus	74.56	75.53
EER91178	Sorghum	nucleus	75.26	75.18
Zm00001d033246_P004	Maize	cytosol	75.26	75.0
GSMUA_Achr2P13060_001	Banana	cytosol	7.39	75.0
Zm00001d013699_P001	Maize	cytosol	75.15	74.88
AT2G34710.1	Thale cress	cytosol	74.56	74.65
TraesCS5A01G375800.1	Wheat	cytosol, nucleus, plastid	75.38	74.59
Os03t0640800-01	Rice	plastid	74.91	74.39
TraesCS5D01G385300.1	Wheat	cytosol, nucleus, plastid	75.15	74.36
GSMUA_Achr4P31660_001	Banana	cytosol	74.68	74.16
TraesCS5B01G378000.1	Wheat	cytosol, nucleus, plastid	74.91	74.13
AT1G30490.1	Thale cress	nucleus	72.92	73.96
Bra021926.1-P	Field mustard	cytosol	72.68	73.55
Bra005398.1-P	Field mustard	cytosol	73.15	73.5
Bra032394.1-P	Field mustard	cytosol, nucleus, plastid	72.33	73.45
GSMUA_Achr7P01060_001	Banana	cytosol	73.39	72.88
GSMUA_Achr5P02420_001	Banana	cytosol	74.56	72.77
TraesCS5A01G043400.1	Wheat	cytosol, nucleus, plastid	71.75	72.34
GSMUA_Achr2P13050_001	Banana	cytosol	66.0	72.09
GSMUA_Achr4P28360_001	Banana	cytosol	75.73	71.78
GSMUA_Achr8P02960_001	Banana	cytosol	70.57	71.75
Os12t0612700-01	Rice	nucleus	71.86	71.7
KRH25015	Soybean	cytosol, nucleus, plastid	68.7	69.68
KRH29910	Soybean	cytosol, nucleus, plastid	68.58	69.48
HORVU5Hr1G010650.1	Barley	cytosol	69.64	69.23
EES17386	Sorghum	mitochondrion	69.4	69.08
TraesCS5B01G047200.1	Wheat	extracellular, mitochondrion, nucleus, plastid	71.16	69.06
TraesCS5D01G052300.1	Wheat	mitochondrion, plastid	71.4	68.97
Zm00001d041489_P009	Maize	cytosol, nucleus, plastid	68.93	67.98
HORVU0Hr1G010250.3	Barley	cytosol	59.32	67.92
KRH58026	Soybean	cytosol	18.64	67.66
KRH52763	Soybean	cytosol	64.01	64.62
KRH62081	Soybean	cytosol	63.77	64.45
KRH44288	Soybean	nucleus	63.19	64.32
KRH47223	Soybean	nucleus	63.07	64.2
Zm00001d031061_P007	Maize	mitochondrion	67.06	63.98
KRH47225	Soybean	cytosol	62.72	63.61
HORVU5Hr1G093150.2	Barley	cytosol, plastid	74.68	63.51
KRH44292	Soybean	cytosol	62.02	62.24
KRH33388	Soybean	cytosol	7.39	60.58
Zm00001d018824_P001	Maize	cytosol	8.32	51.82
CDX71242	Canola	peroxisome	4.34	44.05
AT5G32670.1	Thale cress	cytosol, plastid	9.5	42.19
CDY53980	Canola	cytosol, nucleus, peroxisome	7.15	39.35

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100806322	MapMan:15.5.3.2	Gene3D:3.30.530.20	EMBL:ACUP02003299	ncoils:Coil
EnsemblPlantsGene:GLYMA_05G166400	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
UniProt:I1K476	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	EnsemblPlants:KRH59117	ProteinID:KRH59117
ProteinID:KRH59117.1	InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670	PFscan:PS50071
PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF494	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689
SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI0002339B3A	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:+:35692494..35699192

Molecular Weight (calculated)

93963.3 Da

IEP (calculated)

6.456

GRAVY (calculated)

-0.133

Length

853 amino acids

Sequence
(BLAST)

001: MALCMQSQQR DSASNKLLMD CGKYVRYTPE QVEALERVYV ECPKPSSSRR QQIIRECPLL ANIETKQIKV WFQNRRCREK QRKEASRLQT VNRKLSSMNK
101: LLMEENDRLQ KQVSQLVYDN GFMKQQIHTA SATTTTTTDN SCESVVVSGQ HQPQNPKTQH PQWDANNPAG LLAIAQETLV EFLSKATGTA VNWVQMIGMK
201: PGPDSIGIVA VSRNCSGVAA RACGLVSLEP TKVAEILKDR PSWYRDCRCL NVLSVVSAGN GGTIELMYMQ TYAPTTLAAA RDFWTLRYST SLEDGSLVIC
301: ERSLTSSTGG PTGPAASNFI RAEMLPSGYL IRSCEGGGSI IHIVDHVDLD VWSVPEVLRP LYESPKFLAQ KLTTAALRHA RQIAQESSGD VHYGGGRQPA
401: VLRTFSQRLC KGFNDAVNGF VDDGWSLMGN DGVEDVTIAI NSSPNKFFGS HYNTSMLPAF GGGVMCAKAS MLLQNVPPAL LVRFLREHRS EWANYEVDAY
501: SSACLKASPY AVPCARPSGF PSSHVIIPLA HTIEHEEFLE VVRIEGNAFP PDDVAWACDM YLMQLCSGID ENAIGACAQL VFAPIDESFA DDALLLPSGF
601: RIIPLDPKTD GLASTRTLDL ASTLETGSGN ARSAGESDSN NYNLRSVLTI AFQFTFENHL RDNVAVMARQ YVRNVVRSVQ RVAMAIAPSR LSTQLGPKSF
701: PGPPEALTLA RWICRSYRLH TCTELFSVES TSGDAILKQL WHHPDAILCC SVKTDASPVF TFANQAGLDM LETTLVALQD IMLDKVLDEA GRKVLCIEFS
801: KIMQQGFAYL PAGICVSSMN RPVSYEQAIA WKVLDDDDSN HCLAFVFMNW SFV

Best Arabidopsis Sequence Match ( AT2G34710.1 )
(BLAST)

001: MMMVHSMSRD MMNRESPDKG LDSGKYVRYT PEQVEALERV YTECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEAARL QTVNRKLNAM
101: NKLLMEENDR LQKQVSNLVY ENGHMKHQLH TASGTTTDNS CESVVVSGQQ HQQQNPNPQH QQRDANNPAG LLSIAEEALA EFLSKATGTA VDWVQMIGMK
201: PGPDSIGIVA ISRNCSGIAA RACGLVSLEP MKVAEILKDR PSWLRDCRSV DTLSVIPAGN GGTIELIYTQ MYAPTTLAAA RDFWTLRYST CLEDGSYVVC
301: ERSLTSATGG PTGPPSSNFV RAEMKPSGFL IRPCDGGGSI LHIVDHVDLD AWSVPEVMRP LYESSKILAQ KMTVAALRHV RQIAQETSGE VQYGGGRQPA
401: VLRTFSQRLC RGFNDAVNGF VDDGWSPMGS DGAEDVTVMI NLSPGKFGGS QYGNSFLPSF GSGVLCAKAS MLLQNVPPAV LVRFLREHRS EWADYGVDAY
501: AAASLRASPF AVPCARAGGF PSNQVILPLA QTVEHEESLE VVRLEGHAYS PEDMGLARDM YLLQLCSGVD ENVVGGCAQL VFAPIDESFA DDAPLLPSGF
601: RIIPLEQKST PNGASANRTL DLASALEGST RQAGEADPNG CNFRSVLTIA FQFTFDNHSR DSVASMARQY VRSIVGSIQR VALAIAPRPG SNISPISVPT
701: SPEALTLVRW ISRSYSLHTG ADLFGSDSQT SGDTLLHQLW NHSDAILCCS LKTNASPVFT FANQTGLDML ETTLVALQDI MLDKTLDEPG RKALCSEFPK
801: IMQQGYAHLP AGVCASSMGR MVSYEQATVW KVLEDDESNH CLAFMFVNWS FV

Arabidopsis Description

ATHB-14Homeobox-leucine zipper protein ATHB-14 [Source:UniProtKB/Swiss-Prot;Acc:O04291]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.