Factsheet for Os12t0612700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0594300-00
Os03t0276300-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30490.1	Os02t0594300-00	AT1G12980.1	17376809
AT1G30490.1	Os02t0594300-00	AT1G12980.1	18830673
AT1G30490.1	Os03t0276300-00	AT3G45610.1	21245844
AT2G34710.1	Os03t0276300-00	AT3G45610.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G043400.1	Wheat	cytosol, nucleus, plastid	86.9	87.83
Os03t0640800-01	Rice	plastid	86.55	86.15
TraesCS5D01G052300.1	Wheat	mitochondrion, plastid	87.13	84.37
TraesCS5B01G047200.1	Wheat	extracellular, mitochondrion, nucleus, plastid	86.55	84.19
HORVU5Hr1G010650.1	Barley	cytosol	84.21	83.92
HORVU0Hr1G010250.3	Barley	cytosol	72.16	82.82
GSMUA_Achr4P31660_001	Banana	cytosol	78.6	78.23
VIT_10s0003g04670.t01	Wine grape	cytosol, nucleus, plastid	76.73	77.63
GSMUA_Achr5P02420_001	Banana	cytosol	79.18	77.46
GSMUA_Achr2P13050_001	Banana	cytosol	70.64	77.34
GSMUA_Achr7P01060_001	Banana	cytosol	77.66	77.3
KRH11775	Soybean	cytosol, nucleus, plastid	74.15	74.94
KRH36781	Soybean	cytosol, nucleus, plastid	74.5	74.77
GSMUA_Achr8P02960_001	Banana	cytosol	73.22	74.61
GSMUA_Achr4P28360_001	Banana	cytosol	78.48	74.56
PGSC0003DMT400030829	Potato	cytosol, nucleus, plastid	73.57	73.83
Solyc02g024070.2.1	Tomato	cytosol, nucleus, plastid	72.51	72.86
GSMUA_Achr2P13060_001	Banana	cytosol	7.13	72.62
CDY43661	Canola	cytosol	69.01	72.57
PGSC0003DMT400054421	Potato	cytosol, nucleus, plastid	70.41	72.1
KRH43001	Soybean	cytosol	71.46	71.97
KRH59117	Soybean	cytosol	71.7	71.86
Solyc02g069830.2.1	Tomato	nucleus	70.64	71.73
CDY31635	Canola	nucleus	71.23	71.73
AT2G34710.1	Thale cress	cytosol	71.46	71.71
Bra005398.1-P	Field mustard	cytosol	70.99	71.5
CDX84286	Canola	cytosol	70.88	71.38
Bra021926.1-P	Field mustard	cytosol	70.18	71.17
AT1G30490.1	Thale cress	nucleus	69.94	71.11
Bra032394.1-P	Field mustard	cytosol, nucleus, plastid	69.82	71.07
CDY09572	Canola	cytosol, nucleus, plastid	69.82	71.07
CDY02297	Canola	nucleus	69.82	71.07
Os10t0480200-01	Rice	nucleus	64.44	65.6
Os03t0109400-02	Rice	nucleus	63.27	64.48
Os06t0720500-01	Rice	extracellular, mitochondrion, plastid	10.29	56.77
Os06t0722300-01	Rice	extracellular, mitochondrion, plastid	10.29	56.77
Os06t0722650-01	Rice	extracellular, mitochondrion, plastid	10.29	56.77
Os01t0200300-01	Rice	cytosol, peroxisome	25.15	49.88
CDX71242	Canola	peroxisome	4.56	46.43
AT5G32670.1	Thale cress	cytosol, plastid	9.01	40.1
Solyc01g057960.1.1	Tomato	plastid	6.32	39.13
CDY53980	Canola	cytosol, nucleus, peroxisome	7.02	38.71
Os03t0769800-01	Rice	plastid	4.21	14.88
Os10t0147300-02	Rice	plastid	1.05	8.26

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	EntrezGene:4352777	ProteinID:ABA99386.1	EMBL:AK102183
ProteinID:BAF30279.1	ProteinID:BAT18052.1	ncoils:Coil	ProteinID:EEE53599.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913
InterPro:IPR023393	InterPro:MEKHLA	EnsemblPlantsGene:Os12g0612700	EnsemblPlants:Os12t0612700-01	PFAM:PF00046	PFAM:PF01852
PFAM:PF08670	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF494	UniProt:Q2QM96
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom
UniParc:UPI0000680C43	RefSeq:XP_015620816.1	SEG:seg	:	:	:

Description

HOMEOBOX GENE 33Class III homeodomain-leucine zipper (HD-Zip III) protein, Age-dependent leaf senescence (Os12t0612700-01)

Coordinates

chr12:-:25920652..25927349

Molecular Weight (calculated)

93115.1 Da

IEP (calculated)

6.350

GRAVY (calculated)

-0.157

Length

855 amino acids

Sequence
(BLAST)

001: MAAAAVGGRG ERLSSSSPTA AAPQVDAGKY VRYTPEQVEA LERVYTECPK PSSLRRQQLI RECPILSNIE PKQIKVWFQN RRCREKQRKE ASRLQTVNRK
101: LNAMNKLLME ENDRLQKQVS RLVYENGYMR TQLHNPSAAT TDTSCESVVT SGQHHQQQNP AVLHPQRDAN NPAGLLAIAE ETLAEFMSKA TGTAVEWVQM
201: VGMKPGPDSI GIIAVSHNCS GVAARACGLV SLEPTKVAEI LKDRPSWYRD CRCVDIIHVI PTGNGGTIEL IYMQTYAPTT LAAPRDFWTL RYTSGLEDGS
301: LVICERSLTQ STGGPSGPNT PNFIRAEVLP SGYLIRPCEG GGSMIYIVDH VDLDAWSVPE VLRPLYESPK ILAQKMTIAA LRHIRQIAHE SSGEIPYGAG
401: RQPAVFRTFS QRLSRGFNDA VSGFPDDGWS LLSSDGSEDI TISVNSSPNK LVGSHVSPNP LFSTVGGGIL CAKASMLLQN VPPALLVRFL REHRSEWADP
501: GVDAYSAASL RASPYAVPGL RTSGFMGSQV ILPLAHTLEH EEFLEVIRLE GHGFSHDEVL LSRDMYLLQL CSGVDENATS ASAQLVFAPI DESFADDAPL
601: LPSGFRVIPL DTKMDGPSAT RTLDLASALE VGPGGASRAS VEASGTCNRS VLTIAFQFSY ENHLRESVAA MARSYVRAVM ASVQRVAVAI APSRLGPQIG
701: MKHPPASPEA LTLASWIGRS YRAHTGADIR WSDTEDADSP LALLWKHSDA ILCCSLKPAP MFTFANNAGL DILETTLVNL QDISLEMILD DEGRKALCSE
801: FPKIMQQGFT YLPGGVCKSS MGRQASYEQA VAWKVLSDDD APHCLAFMLV NWTFM

Best Arabidopsis Sequence Match ( AT2G34710.1 )
(BLAST)

001: MMMVHSMSRD MMNRESPDKG LDSGKYVRYT PEQVEALERV YTECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEAARL QTVNRKLNAM
101: NKLLMEENDR LQKQVSNLVY ENGHMKHQLH TASGTTTDNS CESVVVSGQQ HQQQNPNPQH QQRDANNPAG LLSIAEEALA EFLSKATGTA VDWVQMIGMK
201: PGPDSIGIVA ISRNCSGIAA RACGLVSLEP MKVAEILKDR PSWLRDCRSV DTLSVIPAGN GGTIELIYTQ MYAPTTLAAA RDFWTLRYST CLEDGSYVVC
301: ERSLTSATGG PTGPPSSNFV RAEMKPSGFL IRPCDGGGSI LHIVDHVDLD AWSVPEVMRP LYESSKILAQ KMTVAALRHV RQIAQETSGE VQYGGGRQPA
401: VLRTFSQRLC RGFNDAVNGF VDDGWSPMGS DGAEDVTVMI NLSPGKFGGS QYGNSFLPSF GSGVLCAKAS MLLQNVPPAV LVRFLREHRS EWADYGVDAY
501: AAASLRASPF AVPCARAGGF PSNQVILPLA QTVEHEESLE VVRLEGHAYS PEDMGLARDM YLLQLCSGVD ENVVGGCAQL VFAPIDESFA DDAPLLPSGF
601: RIIPLEQKST PNGASANRTL DLASALEGST RQAGEADPNG CNFRSVLTIA FQFTFDNHSR DSVASMARQY VRSIVGSIQR VALAIAPRPG SNISPISVPT
701: SPEALTLVRW ISRSYSLHTG ADLFGSDSQT SGDTLLHQLW NHSDAILCCS LKTNASPVFT FANQTGLDML ETTLVALQDI MLDKTLDEPG RKALCSEFPK
801: IMQQGYAHLP AGVCASSMGR MVSYEQATVW KVLEDDESNH CLAFMFVNWS FV

Arabidopsis Description

ATHB-14Homeobox-leucine zipper protein ATHB-14 [Source:UniProtKB/Swiss-Prot;Acc:O04291]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.