Factsheet for TraesCS5B01G047200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, extracellular, nucleus

Predictor Summary:

plastid 2
extracellular 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G185700.1
TraesCS6A01G208700.1
TraesCS6A01G233700.1
TraesCS6B01G237700.1
TraesCS6D01G192200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30490.1	TraesCS6A01G208700.1	AT1G12980.1	17376809
AT1G30490.1	TraesCS6B01G237700.1	AT1G12980.1	17376809
AT1G30490.1	TraesCS6D01G192200.1	AT1G12980.1	17376809
AT1G30490.1	TraesCS6A01G208700.1	AT1G12980.1	18830673
AT1G30490.1	TraesCS6B01G237700.1	AT1G12980.1	18830673
AT1G30490.1	TraesCS6D01G192200.1	AT1G12980.1	18830673
AT1G30490.1	TraesCS1B01G185700.1	AT3G45610.1	21245844
AT1G30490.1	TraesCS6A01G233700.1	AT3G45610.1	21245844
AT2G34710.1	TraesCS1B01G185700.1	AT3G45610.1	21245844
AT2G34710.1	TraesCS6A01G233700.1	AT3G45610.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G043400.1	Wheat	cytosol, nucleus, plastid	93.86	97.52
TraesCS5D01G052300.1	Wheat	mitochondrion, plastid	96.02	95.58
HORVU5Hr1G010650.1	Barley	cytosol	89.53	91.72
HORVU0Hr1G010250.3	Barley	cytosol	75.31	88.86
Os12t0612700-01	Rice	nucleus	84.19	86.55
TraesCS5B01G378000.1	Wheat	cytosol, nucleus, plastid	79.75	81.32
GSMUA_Achr4P31660_001	Banana	cytosol	74.06	75.79
VIT_10s0003g04670.t01	Wine grape	cytosol, nucleus, plastid	72.7	75.62
GSMUA_Achr2P13050_001	Banana	cytosol	66.33	74.65
GSMUA_Achr7P01060_001	Banana	cytosol	72.7	74.39
KRH11775	Soybean	cytosol, nucleus, plastid	71.56	74.35
KRH36781	Soybean	cytosol, nucleus, plastid	71.56	73.83
GSMUA_Achr5P02420_001	Banana	cytosol	73.27	73.68
GSMUA_Achr8P02960_001	Banana	cytosol	68.94	72.23
PGSC0003DMT400030829	Potato	cytosol, nucleus, plastid	69.74	71.95
KRH43001	Soybean	cytosol	69.17	71.61
GSMUA_Achr4P28360_001	Banana	cytosol	73.04	71.33
Solyc02g024070.2.1	Tomato	cytosol, nucleus, plastid	69.06	71.33
KRH59117	Soybean	cytosol	69.06	71.16
PGSC0003DMT400054421	Potato	cytosol, nucleus, plastid	67.24	70.78
CDY43661	Canola	cytosol	65.3	70.6
GSMUA_Achr2P13060_001	Banana	cytosol	6.71	70.24
Solyc02g069830.2.1	Tomato	nucleus	67.24	70.19
Bra021926.1-P	Field mustard	cytosol	67.24	70.11
Bra005398.1-P	Field mustard	cytosol	67.24	69.61
CDY31635	Canola	nucleus	67.12	69.49
AT2G34710.1	Thale cress	cytosol	67.35	69.48
AT1G30490.1	Thale cress	nucleus	66.44	69.44
Bra032394.1-P	Field mustard	cytosol, nucleus, plastid	66.21	69.29
CDY02297	Canola	nucleus	66.21	69.29
CDY09572	Canola	cytosol, nucleus, plastid	66.21	69.29
CDX84286	Canola	cytosol	66.89	69.26
TraesCS1B01G173900.1	Wheat	nucleus	62.34	65.24
TraesCS4B01G385200.1	Wheat	nucleus	60.3	63.17
TraesCS3B01G159100.2	Wheat	cytosol, nucleus, plastid	56.09	56.28
CDX71242	Canola	peroxisome	4.55	47.62
AT5G32670.1	Thale cress	cytosol, plastid	8.76	40.1
Solyc01g057960.1.1	Tomato	plastid	6.14	39.13
CDY53980	Canola	cytosol, nucleus, peroxisome	6.83	38.71

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR002913	InterPro:IPR023393	InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670
PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF494	SMART:SM00234	SMART:SM00389
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	EnsemblPlantsGene:TraesCS5B01G047200	EnsemblPlants:TraesCS5B01G047200.1
TIGR:cd00086	TIGR:cd08875	TIGR:cd14686	SEG:seg	:	:

Description

No Description!

Coordinates

chr5B:+:53246630..53252235

Molecular Weight (calculated)

95345.3 Da

IEP (calculated)

7.043

GRAVY (calculated)

-0.145

Length

879 amino acids

Sequence
(BLAST)

001: MTRHRPWPPS HPPPPPHPLR VAAATGTDAG KKMARLSPGA AAPQVDTGKY VRYTPEQVEA LERVYNECPK PSSLRRQQII RDCPILCNIE PKQIKVWFQN
101: RRCREKQRKE SSRMQTVNRK LTAMNKLLME ENDRLQKQVS RLVYENASVK SLKTKIHKAS AATTDTSCES VVTSGQQQAL AAPRPQRDAN NPAGLLAIGE
201: ETLTAFLSKA TGTAVEWVQM MGMKPGPDSI GIIAVSHNCI GVAARACGLV SLEPTKVAEI LKDRPSWYRD CRCVDILHVF PTGNGGTIEL IYMQTYAPTT
301: LAAPRDFWTL RYTCGLDDGS LVICERSLTQ STGGPSGPNT PGFIRAEVLP SGYLIRPCEG GGSMIHIVDH VDLDAWSVPE VLRPLYESPK IVAQKMTIAA
401: LRHIRQIAHE SSGEIPYGAG RQPAVLRTFS QRLSRGFNDA VSGFPDDGWS LLTSDGAEDI TITVNSSPNK LVGSHVSPSP LFSAIGGGIL CAKASMLVQD
501: VPPALLVRFL REHRSEWADP GVDAYSAASL RASPYAVPGL RAGGFMGNQV ILPLAHTLEH EEFLEVLRLE GHGFSHDEVL LARDMYLLQL CSGVDENASG
601: ACAQLVFAPI DESFADDAPL LPSGFRVIPL DTKTDVPSAT RTLDLASALD VGSGGALRGS GDSPGGCSTR SVLTIAFQFS FENHLRESVA AMARQYVRAV
701: MASVQRVAMA IAPSRLGGSQ IQLKHPPGSP EALTLASWIG RSYRAHTGEE IRWSDTEEAD SPLKLLWNHS DAILCCSLKP APMFTFGNNA ALDMLETTLV
801: NLQDISLEAI LDDEGRKALC AEFSKVMQQG FAYLPGGVCK SSMGRQVSYE QAVAWKVVGD DVAGAPHCLA FMFVNWTFL

Best Arabidopsis Sequence Match ( AT1G30490.1 )
(BLAST)

001: MMAHHSMDDR DSPDKGFDSG KYVRYTPEQV EALERVYAEC PKPSSLRRQQ LIRECPILCN IEPRQIKVWF QNRRCREKQR KESARLQTVN RKLSAMNKLL
101: MEENDRLQKQ VSNLVYENGF MKHRIHTASG TTTDNSCESV VVSGQQRQQQ NPTHQHPQRD VNNPANLLSI AEETLAEFLC KATGTAVDWV QMIGMKPGPD
201: SIGIVAVSRN CSGIAARACG LVSLEPMKVA EILKDRPSWF RDCRCVETLN VIPTGNGGTI ELVNTQIYAP TTLAAARDFW TLRYSTSLED GSYVVCERSL
301: TSATGGPNGP LSSSFVRAKM LSSGFLIRPC DGGGSIIHIV DHVDLDVSSV PEVLRPLYES SKILAQKMTV AALRHVRQIA QETSGEVQYS GGRQPAVLRT
401: FSQRLCRGFN DAVNGFVDDG WSPMSSDGGE DITIMINSSS AKFAGSQYGS SFLPSFGSGV LCAKASMLLQ NVPPLVLIRF LREHRAEWAD YGVDAYSAAS
501: LRATPYAVPC VRTGGFPSNQ VILPLAQTLE HEEFLEVVRL GGHAYSPEDM GLSRDMYLLQ LCSGVDENVV GGCAQLVFAP IDESFADDAP LLPSGFRVIP
601: LDQKTNPNDH QSASRTRDLA SSLDGSTKTD SETNSRLVLT IAFQFTFDNH SRDNVATMAR QYVRNVVGSI QRVALAITPR PGSMQLPTSP EALTLVRWIT
701: RSYSIHTGAD LFGADSQSCG GDTLLKQLWD HSDAILCCSL KTNASPVFTF ANQAGLDMLE TTLVALQDIM LDKTLDDSGR RALCSEFAKI MQQGYANLPA
801: GICVSSMGRP VSYEQATVWK VVDDNESNHC LAFTLVSWSF V

Arabidopsis Description

ATHB-9Homeobox-leucine zipper protein ATHB-9 [Source:UniProtKB/Swiss-Prot;Acc:O04292]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.