Factsheet for TraesCS6D01G192200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G043400.1
TraesCS5A01G375800.1
TraesCS5B01G047200.1
TraesCS5B01G378000.1
TraesCS5D01G052300.1
TraesCS5D01G385300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12980.1	TraesCS5A01G043400.1	AT1G30490.1	17376809
AT1G12980.1	TraesCS5A01G375800.1	AT1G30490.1	17376809
AT1G12980.1	TraesCS5B01G047200.1	AT1G30490.1	17376809
AT1G12980.1	TraesCS5B01G378000.1	AT1G30490.1	17376809
AT1G12980.1	TraesCS5D01G052300.1	AT1G30490.1	17376809
AT1G12980.1	TraesCS5D01G385300.1	AT1G30490.1	17376809
AT1G12980.1	TraesCS5A01G043400.1	AT1G30490.1	18830673
AT1G12980.1	TraesCS5A01G375800.1	AT1G30490.1	18830673
AT1G12980.1	TraesCS5B01G047200.1	AT1G30490.1	18830673
AT1G12980.1	TraesCS5B01G378000.1	AT1G30490.1	18830673
AT1G12980.1	TraesCS5D01G052300.1	AT1G30490.1	18830673
AT1G12980.1	TraesCS5D01G385300.1	AT1G30490.1	18830673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G237700.1	Wheat	nucleus	98.66	98.66
TraesCS6A01G208700.1	Wheat	nucleus	95.64	95.32
HORVU6Hr1G053460.1	Barley	nucleus	54.36	91.53
Os02t0594300-00	Rice	nucleus	60.4	52.17
Zm00001d050948_P001	Maize	nucleus	49.33	50.0
EES05354	Sorghum	nucleus	48.66	46.77
TraesCS7D01G426700.1	Wheat	nucleus	21.81	32.66
TraesCS6D01G121100.1	Wheat	nucleus	22.15	32.35
TraesCS3D01G321700.1	Wheat	nucleus	18.46	31.79
TraesCS1D01G314700.1	Wheat	nucleus	18.79	30.43
TraesCS2D01G543900.1	Wheat	nucleus	18.79	29.02
TraesCS3D01G321500.1	Wheat	nucleus	22.82	27.64
TraesCS1D01G314800.1	Wheat	nucleus	20.81	26.27
TraesCS6D01G161300.1	Wheat	nucleus	18.12	26.09
TraesCS2D01G425700.1	Wheat	nucleus	18.79	25.81
GSMUA_Achr3P19420_001	Banana	nucleus	23.49	24.65
TraesCS2D01G286900.1	Wheat	plastid	19.46	22.14
GSMUA_AchrUn_...	Banana	nucleus	19.8	21.07
PGSC0003DMT400011492	Potato	nucleus	17.79	20.87
PGSC0003DMT400008830	Potato	nucleus	17.79	20.87
CDY16048	Canola	nucleus	19.8	20.21
Bra026942.1-P	Field mustard	nucleus	19.8	20.07
CDY26605	Canola	nucleus	19.8	20.07
CDY19407	Canola	nucleus	21.14	19.94
GSMUA_Achr9P01870_001	Banana	nucleus	19.13	19.79
Bra019801.1-P	Field mustard	nucleus	21.48	19.69
AT1G12980.1	Thale cress	nucleus	21.14	19.21
KRG99434	Soybean	nucleus	19.8	16.67
KRH74517	Soybean	nucleus	20.13	16.53
VIT_00s0291g00030.t01	Wine grape	nucleus	22.82	16.43
KRH45585	Soybean	nucleus	19.46	16.38
KRH69639	Soybean	nucleus	20.13	15.35
Solyc05g013540.1.1	Tomato	nucleus	19.8	15.29
PGSC0003DMT400047887	Potato	nucleus	19.8	15.13
TraesCS2D01G118200.1	Wheat	nucleus, plastid	14.77	14.92
CDX98022	Canola	nucleus	3.69	5.56

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF40	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS6D01G192200	EnsemblPlants:TraesCS6D01G192200.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr6D:+:265880824..265881720

Molecular Weight (calculated)

32298.5 Da

IEP (calculated)

7.113

GRAVY (calculated)

-0.617

Length

298 amino acids

Sequence
(BLAST)

001: MDVDAAAQTH AHAHRHRSKR SSLASGDVSP TGMQYRGVRR RPWGRFAAEI RDPASKARRW LGTYDTAEQA ACAYDVAARF MRGAKARTNF PAPVDSWPAG
101: YWPWGQSTAQ AHPPAQLNTF ILHNLMSSSP HGCVLLHHAG HGHSHVNPPP PPIPTPPSPR PAASCAAKVT MPDTATASAS SVPGAEDDDD WDWAGVLQGR
201: DPPETGLLQD VVHGFHASRR PRDHVRTAEP DASVWLPNQE RHEAFGGVST SWGAGDNGYE DEGEFPMLPQ GLLQDVVQYP PFMEVVAAPS AMGRSRRA

Best Arabidopsis Sequence Match ( AT1G24590.1 )
(BLAST)

001: MEEAIMRLEG AEHRETNIHS LKRKPSRTSS TAPGSPGGVT TAKAASGAGA SGVSTIRYRG VRRRPWGRYA AEIRDPLSKE RRWLGTFDTA EEAACAYDCA
101: ARAMRGLKAR TNFVYPMPSL DSYHHRIFSS PPMNMFLLRD VLNSQSLSPL TTFAYPPCNL SNVNDVVHES FTNVNDVCED LSPKAKRSST IENESLISNI
201: FEPEPASSGL LQEIVQGFLP KPISQHASIP PKSNQQSVGV FPTMPESGFQ TDVRLADFHV EGNGFGQVKY HGELGWADHE NGFDSAKMQQ NGNGGMFYQY
301: CFHDDY

Arabidopsis Description

ESR2Ethylene-responsive transcription factor ESR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYK5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.