CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91178
EES17386

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12980.1	EER91178	AT1G30490.1	17376809
AT1G12980.1	EES17386	AT1G30490.1	17376809
AT1G12980.1	EER91178	AT1G30490.1	18830673
AT1G12980.1	EES17386	AT1G30490.1	18830673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050948_P001	Maize	nucleus	84.52	89.12
HORVU6Hr1G053460.1	Barley	nucleus	31.94	55.93
TraesCS6D01G192200.1	Wheat	nucleus	46.77	48.66
TraesCS6B01G237700.1	Wheat	nucleus	46.77	48.66
TraesCS6A01G208700.1	Wheat	nucleus	46.13	47.83
Os02t0594300-00	Rice	nucleus	52.9	47.54
EER88863	Sorghum	nucleus	24.19	38.46
OQU82539	Sorghum	nucleus, plastid	20.32	33.16
EES01601	Sorghum	nucleus	17.74	31.07
GSMUA_Achr3P19420_001	Banana	nucleus	27.42	29.93
EES06418	Sorghum	nucleus	20.32	29.44
KXG22269	Sorghum	nucleus	20.32	29.44
KXG24553	Sorghum	nucleus	16.13	29.07
OQU87713	Sorghum	nucleus, plastid	20.65	26.45
EES11400	Sorghum	nucleus	19.35	25.97
EES14717	Sorghum	nucleus	17.74	25.7
EES14715	Sorghum	nucleus	18.06	25.69
EES14716	Sorghum	plastid	16.77	24.76
OQU80085	Sorghum	plastid	18.06	24.35
GSMUA_AchrUn_...	Banana	nucleus	21.61	23.93
EES19749	Sorghum	nucleus, plastid	19.35	23.35
GSMUA_Achr9P01870_001	Banana	nucleus	21.29	22.92
PGSC0003DMT400011492	Potato	nucleus	18.39	22.44
PGSC0003DMT400008830	Potato	nucleus	18.39	22.44
CDY16048	Canola	nucleus	20.32	21.58
CDY26605	Canola	nucleus	20.32	21.43
Bra026942.1-P	Field mustard	nucleus	20.32	21.43
CDY19407	Canola	nucleus	21.61	21.2
AT1G12980.1	Thale cress	nucleus	22.26	21.04
Bra019801.1-P	Field mustard	nucleus	21.61	20.62
KXG30301	Sorghum	nucleus, plastid	18.06	20.29
EES10693	Sorghum	plastid	18.71	20.28
KXG36907	Sorghum	nucleus	18.71	17.74
KRH74517	Soybean	nucleus	20.65	17.63
KRH45585	Soybean	nucleus	20.0	17.51
KRG99434	Soybean	nucleus	20.0	17.51
Solyc05g013540.1.1	Tomato	nucleus	20.97	16.84
PGSC0003DMT400047887	Potato	nucleus	20.65	16.41
KRH69639	Soybean	nucleus	20.65	16.37
VIT_00s0291g00030.t01	Wine grape	nucleus	21.61	16.18
CDX98022	Canola	nucleus	3.87	6.06

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	EntrezGene:8070592	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	UniProt:C5XWH6
InterPro:DNA-bd_dom_sf	EnsemblPlants:EES05354	ProteinID:EES05354	ProteinID:EES05354.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF40	SMART:SM00380	EnsemblPlantsGene:SORBI_3004G200700	SUPFAM:SSF54171
UniParc:UPI0001A851EA	RefSeq:XP_002452378.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:55121062..55121994

Molecular Weight (calculated)

33098.9 Da

IEP (calculated)

7.151

GRAVY (calculated)

-0.419

Length

310 amino acids

Sequence
(BLAST)

001: MEDVANAHLY AHAHAHRSKR PPSSAAMKDG DGDVDLSMKG ARYRGVRRRP WGRFAAEIRD PMSKERRWLG TFDTAEQAAC AYDIAARAMR GNKARTNFPG
101: HATAGYWPWG TPQPAAVAVA HPININPLLL HNLIMSSSHH GCRLLNQAGH GHGHGHGHSV PTRPPAPAPA TDDTTIAGPF PVASHPDVVA MDEDVDDWDG
201: VLRSEPADAG LLQDALHDFY PFTRPRAGGD GRRGLSAAGA DDARAAAAAL VPVMQEGFVF PSPFAGVDGN GEYPMMPQGL LEDVIPHSPA FLEVVAAPSV
301: SVPTRRGRRG

Best Arabidopsis Sequence Match ( AT1G12980.1 )
(BLAST)

001: MEKALRNFTE STHSPDPNPL TKFFTEPTAS PVSRNRKLSS KDTTVTIAGA GSSTTRYRGV RRRPWGRYAA EIRDPMSKER RWLGTFDTAE QAACAYDSAA
101: RAFRGAKART NFTYPTAVIM PEPRFSFSNK KSSPSARCPL PSLPLDSSTQ NFYGAPAAQR IYNTQSIFLR DASCSSRKTT PYNNSFNGSS SSYSASKTAC
201: VSYSENENNE SFFPEESSDT GLLQEVVQEF LKKNRGVPPS PPTPPPVTSH HDNSGYFSNL TIYSENMVQE TKETLSSKLD RYGNFQANDD GVRAVADGGL
301: SLGSNEWGYQ EMLMYGTQLG CTCRRSWG

Arabidopsis Description

ESR1Ethylene-responsive transcription factor ESR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAD4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.