CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024436_P001	Maize	nucleus	80.23	74.19
Os08t0173700-01	Rice	nucleus	61.63	60.57
GSMUA_Achr7P17910_001	Banana	nucleus	56.98	60.49
KRG91757	Soybean	mitochondrion, nucleus	44.77	54.23
KRH35019	Soybean	nucleus, plastid	45.35	49.68
PGSC0003DMT400056527	Potato	nucleus	43.02	46.25
Solyc04g072300.1.1	Tomato	mitochondrion, nucleus	42.44	45.62
AT1G12890.1	Thale cress	nucleus	33.72	26.48
Bra026949.1-P	Field mustard	nucleus	33.72	26.24
EES01601	Sorghum	nucleus	25.0	24.29
EER88863	Sorghum	nucleus	26.16	23.08
CDY11748	Canola	nucleus	30.81	22.94
Bra030076.1-P	Field mustard	nucleus	31.98	22.82
CDX94591	Canola	nucleus	31.98	22.82
Bra010901.1-P	Field mustard	nucleus	30.81	22.65
CDX90126	Canola	nucleus	30.81	22.65
CDY15690	Canola	nucleus	31.4	22.59
OQU80085	Sorghum	plastid	29.65	22.17
OQU82539	Sorghum	nucleus, plastid	24.42	22.11
KXG30301	Sorghum	nucleus, plastid	35.47	22.1
EES14715	Sorghum	nucleus	27.91	22.02
AT1G28160.1	Thale cress	nucleus	30.81	21.63
EES14716	Sorghum	plastid	26.16	21.43
EES06418	Sorghum	nucleus	26.16	21.03
EES11400	Sorghum	nucleus	27.33	20.35
EES14717	Sorghum	nucleus	25.0	20.09
KXG22269	Sorghum	nucleus	25.0	20.09
EES10693	Sorghum	plastid	33.14	19.93
EES19749	Sorghum	nucleus, plastid	29.07	19.46
OQU87713	Sorghum	nucleus, plastid	26.74	19.01
KXG36907	Sorghum	nucleus	34.88	18.35
CDY16037	Canola	nucleus	20.93	18.18
CDY26598	Canola	nucleus	20.35	17.68
EES05354	Sorghum	nucleus	29.07	16.13

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	UniProt:A0A1B6PFT7	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
EnsemblPlants:KXG24553	ProteinID:KXG24553	ProteinID:KXG24553.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31677	PANTHER:PTHR31677:SF39	SMART:SM00380	EnsemblPlantsGene:SORBI_3007G058300	SUPFAM:SSF54171	UniParc:UPI0003C642E1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:6008492..6009801

Molecular Weight (calculated)

18576.3 Da

IEP (calculated)

4.323

GRAVY (calculated)

-0.525

Length

172 amino acids

Sequence
(BLAST)

001: MADAPVAAAI MGVQDQQRRR RTRASSEYLG VRRRPWGRYA AEIRNPVTKE RHWLGTFDTA EEAAVAYDLS AISISGPAAA RTNFYYPRDA TALQRQAELL
101: PYDDAPVPSP APPPSPLSGG SGGGTVDDDD YECQLTVEEA DADDESMTIA AILQSFQHLN NAPSASSADS LY

Best Arabidopsis Sequence Match ( AT1G12890.1 )
(BLAST)

001: MLKSSNKRKS KEEKKLQEGK YLGVRRRPWG RYAAEIRNPF TKERHWLGTF DTAEEAAFAY DVAARSISGS LATTNFFYTE NTSLERHPQQ SLEPHMTWGS
101: SSLCLLQDQP FENNHFVADP ISSSFSQKQE SSTNLTNTFS HCYNDGDHVG QSKEISLPND MSNSLFGHQD KVGEHDNADH MKFGSVLSDE PLCFEYDYIG
201: NYLQSFLKDV NDDAPQFLM

Arabidopsis Description

ERF088Ethylene-responsive transcription factor ERF088 [Source:UniProtKB/Swiss-Prot;Acc:Q3E703]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.