Factsheet for Solyc04g072300.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056527	Potato	nucleus	95.62	95.62
KRG91757	Soybean	mitochondrion, nucleus	58.12	65.49
GSMUA_Achr6P35320_001	Banana	nucleus	52.5	58.74
KRH35019	Soybean	nucleus, plastid	56.25	57.32
GSMUA_Achr7P17910_001	Banana	nucleus	52.5	51.85
Os08t0173700-01	Rice	nucleus	47.5	43.43
KXG24553	Sorghum	nucleus	45.62	42.44
Zm00001d024436_P001	Maize	nucleus	43.75	37.63
Solyc02g077840.1.1	Tomato	nucleus	26.88	27.92
Bra026949.1-P	Field mustard	nucleus	33.12	23.98
CDY11748	Canola	nucleus	34.38	23.81
Bra010901.1-P	Field mustard	nucleus	34.38	23.5
CDX90126	Canola	nucleus	34.38	23.5
AT1G12890.1	Thale cress	nucleus	31.88	23.29
CDX94591	Canola	nucleus	35.0	23.24
Bra030076.1-P	Field mustard	nucleus	35.0	23.24
CDY15690	Canola	nucleus	34.38	23.01
AT1G28160.1	Thale cress	nucleus	35.0	22.86
Solyc12g005960.1.1	Tomato	nucleus	26.88	22.28
Solyc03g006320.1.1	Tomato	nucleus, plastid	30.0	22.22
Solyc07g049490.1.1	Tomato	nucleus	26.25	21.21
Solyc07g053740.1.1	Tomato	nucleus	28.75	20.44
Solyc10g009110.1.1	Tomato	nucleus	28.12	20.27
Solyc10g006130.1.1	Tomato	mitochondrion, nucleus	27.5	19.91
Solyc11g045680.1.1	Tomato	nucleus, plastid	33.75	18.56
Solyc07g064890.1.1	Tomato	nucleus	26.88	17.92
Solyc11g045690.1.1	Tomato	nucleus, plastid	33.75	17.88
Solyc01g067540.1.1	Tomato	nucleus	34.38	17.13
CDY26598	Canola	nucleus	19.38	15.66
CDY16037	Canola	nucleus	18.75	15.15
Solyc05g013540.1.1	Tomato	nucleus	33.75	13.99

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:K4BTL7	PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677
PANTHER:PTHR31677:SF44	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:Solyc04g072300.1	EnsemblPlants:Solyc04g072300.1.1	UniParc:UPI0002766DDF
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:59338208..59338690

Molecular Weight (calculated)

18226.4 Da

IEP (calculated)

7.571

GRAVY (calculated)

-0.737

Length

160 amino acids

Sequence
(BLAST)

001: MENITNTPKL HVRNLVRRSS RHSTKYHGVR RRPWGRYAAE IRNPNTKQRH WLGTFDTAEE AALAYDISSI NFCGIENART NFVYPFSSFP SPYNNSPAPP
101: SPPPQPLPPP PPSTPELEVV ENKCMKIEMN DDINDDDESL VIASILQSFR YTNTLDKLSL

Best Arabidopsis Sequence Match ( AT5G18560.1 )
(BLAST)

001: MSTSKTLDHN KPFETSQTQM GFALIHQNTS ANTTTTTTTG ERRGRRSKQA EPGRFLGVRR RPWGRYAAEI RDPTTKERHW LGTFDTAHEA ALAYDRAALS
101: MRGTQARTNF VYTPTDVHTI LTNPNLHSLI VSPYNNNQSF LPNSSPQFVI DHHPHYQNYH QPQQPKHTLP QTVLPAASFK TPVRHQSVDI QAFGNSPQNS
201: SSNGSLSSSL DEENNFFFSL TSEEHNKSNN NSGYLDCIVP NHCLKPPPEA TTTQNQAGAS FTTPVASKAS EPYGGFSNSY FEDGEMMMMN HHEFGSCDLS
301: AMITNYGAAA ASMSMEDYGM MEPQDLSSSS IAAFGDVVAD TTGFYSVF

Arabidopsis Description

ERF086PUCHI [Source:UniProtKB/TrEMBL;Acc:A0A178URC3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.