Factsheet for PGSC0003DMT400056527

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g072300.1.1	Tomato	mitochondrion, nucleus	95.62	95.62
KRG91757	Soybean	mitochondrion, nucleus	58.12	65.49
GSMUA_Achr6P35320_001	Banana	nucleus	53.12	59.44
KRH35019	Soybean	nucleus, plastid	56.25	57.32
GSMUA_Achr7P17910_001	Banana	nucleus	53.12	52.47
Os08t0173700-01	Rice	nucleus	48.12	44.0
KXG24553	Sorghum	nucleus	46.25	43.02
Zm00001d024436_P001	Maize	nucleus	44.38	38.17
PGSC0003DMT400076408	Potato	nucleus	26.88	28.1
PGSC0003DMT400005596	Potato	nucleus, plastid	31.25	25.51
Bra026949.1-P	Field mustard	nucleus	33.12	23.98
CDY11748	Canola	nucleus	34.38	23.81
CDX94591	Canola	nucleus	35.62	23.65
Bra030076.1-P	Field mustard	nucleus	35.62	23.65
CDX90126	Canola	nucleus	34.38	23.5
Bra010901.1-P	Field mustard	nucleus	34.38	23.5
CDY15690	Canola	nucleus	35.0	23.43
AT1G12890.1	Thale cress	nucleus	31.88	23.29
AT1G28160.1	Thale cress	nucleus	35.0	22.86
PGSC0003DMT400036071	Potato	nucleus	26.88	22.63
PGSC0003DMT400001820	Potato	nucleus	26.88	22.16
PGSC0003DMT400008830	Potato	nucleus	33.75	21.26
PGSC0003DMT400011492	Potato	nucleus	33.75	21.26
PGSC0003DMT400068959	Potato	nucleus	28.75	20.54
PGSC0003DMT400037359	Potato	mitochondrion, nucleus	28.12	20.18
PGSC0003DMT400033391	Potato	nucleus	28.75	20.0
PGSC0003DMT400058751	Potato	nucleus	28.12	19.91
PGSC0003DMT400005585	Potato	nucleus, plastid	33.75	18.62
PGSC0003DMT400057443	Potato	nucleus	27.5	18.33
PGSC0003DMT400035731	Potato	nucleus	30.62	16.5
PGSC0003DMT400058356	Potato	nucleus	35.0	16.42
CDY26598	Canola	nucleus	19.38	15.66
CDY16037	Canola	nucleus	18.75	15.15
PGSC0003DMT400047887	Potato	nucleus	33.75	13.85

Protein Annotations

EntrezGene:102604429	Gene3D:3.30.730.10	MapMan:35.1	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	UniProt:M1BZK0	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400021969	PGSC:PGSC0003DMG400021969	EnsemblPlants:PGSC0003DMT400056527
PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF44	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI00029657FE	RefSeq:XP_006354089.1	SEG:seg	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021969]

Coordinates

chr4:+:61909635..61910149

Molecular Weight (calculated)

18180.4 Da

IEP (calculated)

7.572

GRAVY (calculated)

-0.691

Length

160 amino acids

Sequence
(BLAST)

001: MENITNIPKL HVRNLVRRSS RHSTKYHGVR RRPWGRYAAE IRNPNTKQRH WLGTFDTAEE AALAYDISSI TFCGIESART NFVYPFSSFP SPYNNSPAPP
101: SPPPRPPPPP PPSTPELEVV ENNCMKIEMN DDINDDDESL VIASILQSFR YTNTLDKLAL

Best Arabidopsis Sequence Match ( AT5G13910.1 )
(BLAST)

001: MNTTSSKSKK KQDDQVGTRF LGVRRRPWGR YAAEIRDPTT KERHWLGTFD TAEEAALAYD RAARSMRGTR ARTNFVYSDM PPSSSVTSIV SPDDPPPPPP
101: PPAPPSNDPV DYMMMFNQYS STDSPMLQPH CDQVDSYMFG GSQSSNSYCY SNDSSNELPP LPSDLSNSCY SQPQWTWTGD DYSSEYVHSP MFSRMPPVSD
201: SFPQGFNYFG S

Arabidopsis Description

LEPLEP [Source:UniProtKB/TrEMBL;Acc:A0A178UQP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.