Factsheet for PGSC0003DMT400068959

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g053740.1.1	Tomato	nucleus	92.41	92.0
KRH32582	Soybean	nucleus	26.79	65.93
GSMUA_Achr7P00350_001	Banana	nucleus	30.36	61.82
VIT_12s0028g03270.t01	Wine grape	nucleus	51.34	54.5
VIT_10s0003g00140.t01	Wine grape	nucleus	50.89	50.22
KRH21384	Soybean	nucleus	49.55	50.0
KRH10927	Soybean	nucleus	46.88	47.95
GSMUA_Achr6P00250_001	Banana	nucleus	50.0	46.86
GSMUA_Achr4P23620_001	Banana	nucleus	45.54	45.54
Os05t0497300-01	Rice	nucleus	47.32	44.92
GSMUA_Achr9P11480_001	Banana	nucleus	44.64	44.25
Zm00001d012585_P001	Maize	nucleus	47.32	43.98
PGSC0003DMT400058751	Potato	nucleus	44.2	43.81
OQU87713	Sorghum	nucleus, plastid	46.88	43.39
GSMUA_Achr8P03550_001	Banana	nucleus	41.52	43.06
Zm00001d043205_P001	Maize	nucleus	45.54	43.04
TraesCS3B01G357500.1	Wheat	nucleus, plastid	45.98	42.39
TraesCS1A01G314300.1	Wheat	nucleus	44.64	42.37
TraesCS1B01G326600.1	Wheat	nucleus	45.09	42.08
HORVU0Hr1G007050.2	Barley	nucleus, plastid	45.09	41.91
HORVU3Hr1G078150.2	Barley	nucleus, plastid	45.09	41.91
TraesCS3D01G321500.1	Wheat	nucleus	45.98	41.87
TraesCS3A01G328000.1	Wheat	nucleus	45.98	41.7
TraesCS1D01G314800.1	Wheat	nucleus	43.75	41.53
Os01t0797600-01	Rice	nucleus, plastid	43.3	41.28
PGSC0003DMT400035731	Potato	nucleus	54.02	40.74
Zm00001d000339_P001	Maize	nucleus	41.96	40.34
PGSC0003DMT400001820	Potato	nucleus	34.82	40.21
PGSC0003DMT400076408	Potato	nucleus	27.23	39.87
PGSC0003DMT400036071	Potato	nucleus	33.48	39.47
EES19749	Sorghum	nucleus, plastid	44.2	38.52
Zm00001d038585_P001	Maize	mitochondrion, nucleus	37.5	38.18
GSMUA_Achr10P...	Banana	nucleus	37.5	37.84
KRH45546	Soybean	nucleus	30.36	37.78
GSMUA_Achr4P33270_001	Banana	nucleus	41.07	34.59
PGSC0003DMT400033391	Potato	nucleus	35.27	34.35
PGSC0003DMT400037359	Potato	mitochondrion, nucleus	33.93	34.08
PGSC0003DMT400057443	Potato	nucleus	34.82	32.5
PGSC0003DMT400056527	Potato	nucleus	20.54	28.75
PGSC0003DMT400005596	Potato	nucleus, plastid	20.98	23.98
PGSC0003DMT400011492	Potato	nucleus	25.45	22.44
PGSC0003DMT400008830	Potato	nucleus	25.45	22.44
PGSC0003DMT400005585	Potato	nucleus, plastid	23.21	17.93
PGSC0003DMT400047887	Potato	nucleus	28.12	16.15
PGSC0003DMT400058356	Potato	nucleus	24.11	15.84

Protein Annotations

EntrezGene:102605299	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:M1CJQ8	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400026821	PGSC:PGSC0003DMG400026821	EnsemblPlants:PGSC0003DMT400068959	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF19	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002960FB1
RefSeq:XP_006367798.1	SEG:seg	:	:	:	:

Description

Ethylene-responsive transcription factor 4 [Source:PGSC_GENE;Acc:PGSC0003DMG400026821]

Coordinates

chr7:-:49531657..49532565

Molecular Weight (calculated)

24134.6 Da

IEP (calculated)

9.782

GRAVY (calculated)

-0.463

Length

224 amino acids

Sequence
(BLAST)

001: MAVKDKAVKG GNVKVSNGVK EVHYRGVRKR PWGRYAAEIR DPGKKSRVWL GTFDTAEEAA KAYDTAAREF RGPKAKTNFP FPAEINNNNS NNQSPCGSST
101: VESSSGETVV HAPHTPHAPL ELDLTRRLGA VAEGGRGGVG YPIFHQQPTV AVLPNGQPVL LFDSMWRPGV VSRPYQVVPA PMEFAGVGAG VVSTVSDSSS
201: VVEENRYRKK GLDLDLNLAP PMEV

Best Arabidopsis Sequence Match ( AT3G15210.1 )
(BLAST)

001: MAKMGLKPDP ATTNQTHNNA KEIRYRGVRK RPWGRYAAEI RDPGKKTRVW LGTFDTAEEA ARAYDTAARD FRGAKAKTNF PTFLELSDQK VPTGFARSPS
101: QSSTLDCASP PTLVVPSATA GNVPPQLELS LGGGGGGSCY QIPMSRPVYF LDLMGIGNVG RGQPPPVTSA FRSPVVHVAT KMACGAQSDS DSSSVVDFEG
201: GMEKRSQLLD LDLNLPPPSE QA

Arabidopsis Description

ERF4Ethylene-responsive transcription factor 4 [Source:UniProtKB/Swiss-Prot;Acc:O80340]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.