Factsheet for HORVU3Hr1G078150.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G007050.2	Barley	nucleus, plastid	100.0	100.0
TraesCS3B01G357500.1	Wheat	nucleus, plastid	95.44	94.65
TraesCS3D01G321500.1	Wheat	nucleus	95.44	93.5
TraesCS3A01G328000.1	Wheat	nucleus	95.44	93.12
Os01t0797600-01	Rice	nucleus, plastid	79.67	81.7
OQU87713	Sorghum	nucleus, plastid	79.25	78.93
Zm00001d043205_P001	Maize	nucleus	77.18	78.48
Zm00001d012585_P001	Maize	nucleus	72.2	72.2
KRH32582	Soybean	nucleus	22.41	59.34
GSMUA_Achr8P03550_001	Banana	nucleus	45.23	50.46
KRH10927	Soybean	nucleus	43.57	47.95
KRH21384	Soybean	nucleus	42.74	46.4
VIT_12s0028g03270.t01	Wine grape	nucleus	40.25	45.97
PGSC0003DMT400068959	Potato	nucleus	41.91	45.09
Solyc07g053740.1.1	Tomato	nucleus	41.08	44.0
CDX89866	Canola	nucleus	31.95	42.78
Solyc10g009110.1.1	Tomato	nucleus	39.0	42.34
Bra015266.1-P	Field mustard	nucleus	31.54	41.53
PGSC0003DMT400058751	Potato	nucleus	38.59	41.15
CDY18185	Canola	nucleus	30.29	40.56
GSMUA_Achr10P...	Banana	nucleus	37.34	40.54
Solyc03g006320.1.1	Tomato	nucleus, plastid	34.02	37.96
PGSC0003DMT400033391	Potato	nucleus	34.02	35.65
KRH45546	Soybean	nucleus	26.14	35.0
HORVU1Hr1G067160.1	Barley	nucleus	27.8	34.9
HORVU7Hr1G099670.1	Barley	nucleus	27.39	34.74
HORVU2Hr1G099890.2	Barley	nucleus	29.05	32.26
HORVU6Hr1G053460.1	Barley	nucleus	23.24	31.64
PGSC0003DMT400035731	Potato	nucleus	37.76	30.64
HORVU2Hr1G071470.1	Barley	plastid	25.73	23.57

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	ProteinID:AEI54690.1	EMBL:AK356211	EMBL:AK356221	EMBL:AK362124
EMBL:AK368108	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	UniProt:F2CX58
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU3Hr1G078150	EnsemblPlants:HORVU3Hr1G078150.2
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31677	PANTHER:PTHR31677:SF19	SMART:SM00380	SUPFAM:SSF54171	TMHMM:TMhelix	UniParc:UPI0002004C1C
SEG:seg	:	:	:	:	:

Description

AP2/EREBP-like protein [Source:UniProtKB/TrEMBL;Acc:F2CX58]

Coordinates

chrchr3H:+:576753889..576755058

Molecular Weight (calculated)

24662.9 Da

IEP (calculated)

9.598

GRAVY (calculated)

-0.242

Length

241 amino acids

Sequence
(BLAST)

001: MAPRAAEKAP VSPPTGLGLG VGGGVGVVAG GAHYRGVRKR PWGRFAAEIR DPAKKSRVWL GTYDTAEEAA RAYDTAAREF RGAKAKTNFP FPSSSSPSPL
101: AAGGGSPSSN STLDSSGGGS GGCAQAPMQA IPLPPALDLD LFHRAAAVTA GGMRFPFNGY PVAPRQPLHP YFFYEQAAAA AAASSGYRTL KMAQPVTVAA
201: VAQSDSDSSS VVDLSPSPPA VTAHKAVAFD LDLNRPPPSE D

Best Arabidopsis Sequence Match ( AT3G15210.1 )
(BLAST)

001: MAKMGLKPDP ATTNQTHNNA KEIRYRGVRK RPWGRYAAEI RDPGKKTRVW LGTFDTAEEA ARAYDTAARD FRGAKAKTNF PTFLELSDQK VPTGFARSPS
101: QSSTLDCASP PTLVVPSATA GNVPPQLELS LGGGGGGSCY QIPMSRPVYF LDLMGIGNVG RGQPPPVTSA FRSPVVHVAT KMACGAQSDS DSSSVVDFEG
201: GMEKRSQLLD LDLNLPPPSE QA

Arabidopsis Description

ERF4Ethylene-responsive transcription factor 4 [Source:UniProtKB/Swiss-Prot;Acc:O80340]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.