Factsheet for HORVU6Hr1G053460.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G010250.3
HORVU5Hr1G010650.1
HORVU5Hr1G093150.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12980.1	HORVU0Hr1G010250.3	AT1G30490.1	17376809
AT1G12980.1	HORVU5Hr1G010650.1	AT1G30490.1	17376809
AT1G12980.1	HORVU5Hr1G093150.2	AT1G30490.1	17376809
AT1G12980.1	HORVU0Hr1G010250.3	AT1G30490.1	18830673
AT1G12980.1	HORVU5Hr1G010650.1	AT1G30490.1	18830673
AT1G12980.1	HORVU5Hr1G093150.2	AT1G30490.1	18830673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G237700.1	Wheat	nucleus	92.09	54.7
TraesCS6D01G192200.1	Wheat	nucleus	91.53	54.36
TraesCS6A01G208700.1	Wheat	nucleus	90.96	53.85
Zm00001d050948_P001	Maize	nucleus	55.37	33.33
Os02t0594300-00	Rice	nucleus	64.97	33.33
EES05354	Sorghum	nucleus	55.93	31.94
HORVU1Hr1G067160.1	Barley	nucleus	27.68	25.52
HORVU7Hr1G099670.1	Barley	nucleus	27.12	25.26
HORVU3Hr1G078150.2	Barley	nucleus, plastid	31.64	23.24
HORVU0Hr1G007050.2	Barley	nucleus, plastid	31.64	23.24
GSMUA_Achr3P19420_001	Banana	nucleus	33.9	21.13
PGSC0003DMT400011492	Potato	nucleus	28.25	19.68
PGSC0003DMT400008830	Potato	nucleus	28.25	19.68
HORVU2Hr1G071470.1	Barley	plastid	28.81	19.39
GSMUA_AchrUn_...	Banana	nucleus	30.51	19.29
CDY16048	Canola	nucleus	30.51	18.49
CDY26605	Canola	nucleus	30.51	18.37
Bra026942.1-P	Field mustard	nucleus	30.51	18.37
CDY19407	Canola	nucleus	31.64	17.72
GSMUA_Achr9P01870_001	Banana	nucleus	28.81	17.71
AT1G12980.1	Thale cress	nucleus	32.2	17.38
Bra019801.1-P	Field mustard	nucleus	31.07	16.92
HORVU2Hr1G099890.2	Barley	nucleus	20.34	16.59
KRG99434	Soybean	nucleus	32.2	16.1
KRH45585	Soybean	nucleus	31.64	15.82
KRH74517	Soybean	nucleus	32.2	15.7
KRH69639	Soybean	nucleus	32.77	14.83
VIT_00s0291g00030.t01	Wine grape	nucleus	34.46	14.73
Solyc05g013540.1.1	Tomato	nucleus	28.81	13.21
PGSC0003DMT400047887	Potato	nucleus	28.81	13.08
CDX98022	Canola	nucleus	2.82	2.53

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU6Hr1G053460	EnsemblPlants:HORVU6Hr1G053460.1	InterPro:IPR001471
InterPro:IPR036955	UniProt:M0Z0V1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677
PANTHER:PTHR31677:SF40	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002969B58	SEG:seg	:

Description

No Description!

Coordinates

chrchr6H:-:332522116..332522710

Molecular Weight (calculated)

19129.5 Da

IEP (calculated)

9.983

GRAVY (calculated)

-0.523

Length

177 amino acids

Sequence
(BLAST)

001: MDVDAAAQTH AHAHAHRHRS KRSSLASGEV SPTGMQYRGV RRRPWGRFAA EIRDPVSKAR RWLGTYDTAE QAACAYDVAA RFMRGPKART NFPAPVDSWP
101: AGYWPWGQST AQAHPPAQLN TFILHNLMSS SPHGCLLLHH AGHGHAHANP PPPPIPTPAP SCPASSCAVT VTMPDTA

Best Arabidopsis Sequence Match ( AT1G24590.1 )
(BLAST)

001: MEEAIMRLEG AEHRETNIHS LKRKPSRTSS TAPGSPGGVT TAKAASGAGA SGVSTIRYRG VRRRPWGRYA AEIRDPLSKE RRWLGTFDTA EEAACAYDCA
101: ARAMRGLKAR TNFVYPMPSL DSYHHRIFSS PPMNMFLLRD VLNSQSLSPL TTFAYPPCNL SNVNDVVHES FTNVNDVCED LSPKAKRSST IENESLISNI
201: FEPEPASSGL LQEIVQGFLP KPISQHASIP PKSNQQSVGV FPTMPESGFQ TDVRLADFHV EGNGFGQVKY HGELGWADHE NGFDSAKMQQ NGNGGMFYQY
301: CFHDDY

Arabidopsis Description

ESR2Ethylene-responsive transcription factor ESR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYK5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.