Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G326500.1 | Wheat | nucleus | 82.81 | 86.41 |
| TraesCS1D01G314700.1 | Wheat | nucleus | 82.29 | 85.87 |
| TraesCS1A01G314200.1 | Wheat | nucleus | 82.81 | 84.57 |
| Os05t0497200-01 | Rice | nucleus | 61.46 | 62.43 |
| Zm00001d038584_P001 | Maize | nucleus | 58.85 | 53.81 |
| Zm00001d010676_P001 | Maize | nucleus | 56.77 | 53.17 |
| KXG22269 | Sorghum | nucleus | 57.81 | 51.87 |
| GSMUA_Achr8P15820_001 | Banana | nucleus | 41.15 | 46.47 |
| PGSC0003DMT400076408 | Potato | nucleus | 31.77 | 39.87 |
| Solyc02g077840.1.1 | Tomato | nucleus | 31.77 | 39.61 |
| VIT_10s0003g00130.t01 | Wine grape | nucleus | 31.25 | 39.47 |
| KRH21385 | Soybean | nucleus | 30.73 | 36.2 |
| KRH10926 | Soybean | nucleus | 31.25 | 34.88 |
| CDY15674 | Canola | nucleus | 32.29 | 34.83 |
| Bra030094.1-P | Field mustard | nucleus | 32.29 | 34.83 |
| CDY34107 | Canola | nucleus | 32.29 | 34.25 |
| Bra032898.1-P | Field mustard | nucleus | 32.29 | 34.25 |
| CDX94610 | Canola | nucleus | 29.17 | 33.73 |
| CDY35734 | Canola | nucleus | 32.29 | 33.51 |
| Bra010881.1-P | Field mustard | nucleus | 31.77 | 33.15 |
| CDX90145 | Canola | nucleus | 31.77 | 33.15 |
| AT1G28360.1 | Thale cress | nucleus | 32.29 | 32.8 |
| CDY30806 | Canola | nucleus | 31.25 | 32.79 |
| HORVU7Hr1G099670.1 | Barley | nucleus | 30.73 | 31.05 |
| HORVU3Hr1G078150.2 | Barley | nucleus, plastid | 34.9 | 27.8 |
| HORVU0Hr1G007050.2 | Barley | nucleus, plastid | 34.9 | 27.8 |
| HORVU6Hr1G053460.1 | Barley | nucleus | 25.52 | 27.68 |
| HORVU2Hr1G099890.2 | Barley | nucleus | 22.92 | 20.28 |
| HORVU2Hr1G071470.1 | Barley | plastid | 27.6 | 20.15 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | UniProt:A0A287G1W1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU1Hr1G067160 | EnsemblPlants:HORVU1Hr1G067160.1 |
| InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31677 |
| PANTHER:PTHR31677:SF41 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000B476B84 | SEG:seg | : |
Description
No Description!
Coordinates
chrchr1H:-:476758262..476759481
Molecular Weight (calculated)
21114.1 Da
IEP (calculated)
10.901
GRAVY (calculated)
-0.668
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MQMPPEMRGR RGSSCGGGGV VQRGGAGEAV GRSQAQGHYR GVRKRPWGRY AAEIRDPWKK TRVWLGTYDT AVDAALAYDR AAVALRGSKA RTNFGSGHLP
101: PHHHHHHQHQ QQQQPCLLPR PPARPFGGRL DVANPSPWHF VYFPSRLQEF LAQPLPAHAA PSLPSTVLEL RTGPSSCPQF DLNEPPSLLF GS
101: PHHHHHHQHQ QQQQPCLLPR PPARPFGGRL DVANPSPWHF VYFPSRLQEF LAQPLPAHAA PSLPSTVLEL RTGPSSCPQF DLNEPPSLLF GS
001: MASTTCAREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG IKAKTNFPSP LSLDLNHLPS APSAATAAAN NQPHQHQQLW
101: FAAPPPVPPS SDHHHQHHRI FLRTGVLNDK TSDYSSTEAP LYFTSSPNTA TSSPGYQVVG FPMMNSSPSP VTVRRGLAID LNEPPPLWL
101: FAAPPPVPPS SDHHHQHHRI FLRTGVLNDK TSDYSSTEAP LYFTSSPNTA TSSPGYQVVG FPMMNSSPSP VTVRRGLAID LNEPPPLWL
Arabidopsis Description
ERF12Ethylene-responsive transcription factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q94ID6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.