Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU6Hr1G093960.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G32540.1 | HORVU6Hr1G093960.1 | AT5G08330.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G278800.2 | Wheat | plastid | 51.24 | 99.32 |
| TraesCS1B01G288600.3 | Wheat | plastid | 51.24 | 99.32 |
| TraesCS1A01G279500.3 | Wheat | plastid | 51.24 | 99.32 |
| EES14592 | Sorghum | plastid | 47.35 | 93.71 |
| Solyc08g077060.2.1 | Tomato | plastid | 44.17 | 86.21 |
| KRH77212 | Soybean | plastid | 42.76 | 82.31 |
| GSMUA_Achr7P04710_001 | Banana | plastid | 40.64 | 81.56 |
| PGSC0003DMT400045143 | Potato | plastid | 43.11 | 80.26 |
| KRH04330 | Soybean | plastid | 42.4 | 80.0 |
| GSMUA_AchrUn_... | Banana | plastid | 41.34 | 78.0 |
| Os08t0159500-01 | Rice | nucleus | 49.82 | 76.63 |
| Bra010171.1-P | Field mustard | plastid | 42.4 | 76.43 |
| CDX73255 | Canola | extracellular | 24.38 | 75.0 |
| KRH58208 | Soybean | plastid | 30.39 | 69.92 |
| VIT_02s0012g00990.t01 | Wine grape | cytosol, extracellular, plastid | 44.17 | 65.44 |
| GSMUA_Achr3P27560_001 | Banana | extracellular | 46.64 | 63.77 |
| AT1G32540.1 | Thale cress | extracellular | 38.52 | 58.29 |
| CDY01267 | Canola | mitochondrion | 14.13 | 54.79 |
| Zm00001d049525_P004 | Maize | plastid | 27.56 | 38.81 |
| HORVU5Hr1G093280.4 | Barley | mitochondrion | 27.92 | 34.35 |
| HORVU7Hr1G074030.2 | Barley | cytosol | 13.43 | 28.79 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G073170.3 | EnsemblPlantsGene:HORVU1Hr1G073170 | InterPro:Znf_LSD1 | PANTHER:PTHR31747 | PFAM:PF06943 | SEG:seg |
| TIGRFAMs:TIGR01053 | UniParc:UPI000B464648 | UniProt:A0A287G7I9 | MapMan:27.2.1 | : | : |
Description
No Description!
Coordinates
chrchr1H:-:501616873..501619587
Molecular Weight (calculated)
28632.8 Da
IEP (calculated)
8.373
GRAVY (calculated)
-0.058
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: ALPYLPHSNS CCYSEQNSTR SLVSTSAPDR AQQSPSRRRS SARGAAPCGS ASSSEPGKRE PPSSSGSASA ATTSVGGGIA RSSDEQNRGV LTGISHNLCR
101: ISCRGGQSVL IPSTSSRACE VSSAATTTPA QAAAGTAMPV PLAPYPTPPA PFTPPAPNAG AQSQLVCSGC RNLLMYPAGA TSVCCAVCST VTAVPAPGTE
201: MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLAMEANQVA HVNCGSCRML LMYQYGARSV KCAVCSFVTS VGASSGAEQK PSN
101: ISCRGGQSVL IPSTSSRACE VSSAATTTPA QAAAGTAMPV PLAPYPTPPA PFTPPAPNAG AQSQLVCSGC RNLLMYPAGA TSVCCAVCST VTAVPAPGTE
201: MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLAMEANQVA HVNCGSCRML LMYQYGARSV KCAVCSFVTS VGASSGAEQK PSN
001: MHTWKNQIFS DSQFVLLFMG KNCSIIFPEP HLFISHVFII HLNVLFLVKK INKNNLRFVG STSGQSQLVC SGCRNLLMYP VGATSVCCAV CNAVTAVPPP
101: GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLALEAN QVAHVNCGNC MMLLMYQYGA RSVKCAVCNF VTSVGGSTST TDSKFNN
101: GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLALEAN QVAHVNCGNC MMLLMYQYGA RSVKCAVCNF VTSVGGSTST TDSKFNN
Arabidopsis Description
LOL1lsd one like 1 [Source:TAIR;Acc:AT1G32540]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.