Factsheet for Os08t0159500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

nucleus: 15915636

gfp PMID: 15915636 doi

L Wang, Z Pei, Y Tian, C He

National Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100080, P R. China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0828566-01
Os03t0422702-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32540.1	Os02t0828566-01	AT5G08330.1	21798944
AT1G32540.1	Os03t0422702-00	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14592	Sorghum	plastid	76.09	97.9
TraesCS1D01G278800.2	Wheat	plastid	72.83	91.78
TraesCS1B01G288600.3	Wheat	plastid	72.83	91.78
TraesCS1A01G279500.3	Wheat	plastid	72.83	91.78
Solyc08g077060.2.1	Tomato	plastid	67.93	86.21
GSMUA_Achr7P04710_001	Banana	plastid	64.13	83.69
PGSC0003DMT400045143	Potato	plastid	66.85	80.92
KRH77212	Soybean	plastid	64.13	80.27
KRH04330	Soybean	plastid	64.67	79.33
GSMUA_AchrUn_...	Banana	plastid	62.5	76.67
CDX73255	Canola	extracellular	36.96	73.91
Bra010171.1-P	Field mustard	plastid	63.04	73.89
KRH58208	Soybean	plastid	45.65	68.29
VIT_02s0012g00990.t01	Wine grape	cytosol, extracellular, plastid	67.93	65.44
GSMUA_Achr3P27560_001	Banana	extracellular	69.02	61.35
AT1G32540.1	Thale cress	extracellular	60.87	59.89
CDY01267	Canola	mitochondrion	21.74	54.79
HORVU1Hr1G073170.3	Barley	plastid	76.63	49.82
Os12t0611000-01	Rice	plastid	39.67	42.44
Zm00001d049525_P004	Maize	plastid	42.93	39.3
Os03t0639600-01	Rice	mitochondrion, plastid	38.59	38.17
Os08t0130100-01	Rice	cytosol	28.8	36.05
Os01t0612700-01	Rice	nucleus	26.09	5.47

Protein Annotations

MapMan:27.2.1	EntrezGene:4344713	EMBL:AJ620676	EMBL:AK111759	EMBL:AY525368	ProteinID:BAF22956.1
ProteinID:BAT03922.1	ProteinID:EEE68083.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006950	GO:GO:0006952	GO:GO:0008150	GO:GO:0008219	GO:GO:0009626	GO:GO:0009987
GO:GO:0030154	GO:GO:0031348	GO:GO:0034051	GO:GO:0045595	InterPro:Multihaem_cyt_sf	EnsemblPlantsGene:Os08g0159500
EnsemblPlants:Os08t0159500-01	PFAM:PF06943	PANTHER:PTHR31747	PANTHER:PTHR31747:SF1	UniProt:Q0J7V9	SUPFAM:SSF48695
TIGRFAMs:TIGR01053	UniParc:UPI0000DD93CA	RefSeq:XP_015648108.1	RefSeq:XP_015648109.1	RefSeq:XP_015648110.1	RefSeq:XP_015648111.1
InterPro:Znf_LSD1	SEG:seg	:	:	:	:

Description

zinc finger protein LSD1, LESION SIMULATING DISEASE1.1, LESION SIMULATING DISEASE 1.1Similar to Zinc-finger protein Lsd1. (Os08t0159500-01);Similar to LOL1. (Os08t0159500-02)

Coordinates

chr8:-:3460798..3463758

Molecular Weight (calculated)

19022.1 Da

IEP (calculated)

7.832

GRAVY (calculated)

0.295

Length

184 amino acids

Sequence
(BLAST)

001: MHLSAGFLSC RERKGDFSCL TAARICEAST SDAVVQAAGT AMPVPLAPYP TPPVPFTPPN GAQSQLVCSG CRNLLMYPAG ATSVCCAVCS TVTAVPAPGT
101: EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLAMEANQV AHVNCGNCRM LLMYQYGARS VKCAVCNFVT SVGASPGTDQ KPSS

Best Arabidopsis Sequence Match ( AT1G32540.1 )
(BLAST)

001: MHTWKNQIFS DSQFVLLFMG KNCSIIFPEP HLFISHVFII HLNVLFLVKK INKNNLRFVG STSGQSQLVC SGCRNLLMYP VGATSVCCAV CNAVTAVPPP
101: GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLALEAN QVAHVNCGNC MMLLMYQYGA RSVKCAVCNF VTSVGGSTST TDSKFNN

Arabidopsis Description

LOL1lsd one like 1 [Source:TAIR;Acc:AT1G32540]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.