Factsheet for Os03t0639600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1
mitochondrion 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91186	Sorghum	extracellular, mitochondrion, peroxisome, plastid	77.96	82.86
TraesCS5D01G386200.2	Wheat	mitochondrion	77.42	79.56
TraesCS5A01G376200.1	Wheat	mitochondrion	76.88	79.44
TraesCS5B01G379800.1	Wheat	mitochondrion	76.88	79.44
Os12t0611000-01	Rice	plastid	66.67	72.09
Zm00001d033262_P001	Maize	extracellular	70.97	69.47
GSMUA_Achr7P00950_001	Banana	mitochondrion	62.9	65.36
KRH43079	Soybean	extracellular	60.75	63.84
KRH59208	Soybean	extracellular	60.75	63.84
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	54.3	62.35
HORVU5Hr1G093280.4	Barley	mitochondrion	76.88	62.17
PGSC0003DMT400054616	Potato	extracellular	57.53	61.49
KRH37706	Soybean	mitochondrion	55.91	59.77
Bra020924.1-P	Field mustard	cytosol	39.25	57.94
CDX76459	Canola	cytosol	53.76	55.56
CDX98669	Canola	cytosol	56.99	55.5
CDX94003	Canola	mitochondrion	57.53	55.44
Bra038804.1-P	Field mustard	cytosol	57.53	55.15
CDX78991	Canola	cytosol	55.38	53.93
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	55.91	53.61
Bra013460.1-P	Field mustard	cytosol	55.38	53.37
Os08t0130100-01	Rice	cytosol	41.4	52.38
KRH12749	Soybean	extracellular	55.38	50.99
AT4G20380.8	Thale cress	extracellular	57.53	50.95
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	42.47	47.31
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	58.06	41.7
CDY49490	Canola	plastid	51.61	39.83
Os08t0159500-01	Rice	nucleus	38.17	38.59
Os01t0612700-01	Rice	nucleus	24.73	5.24

Protein Annotations

MapMan:27.2.1	EntrezGene:4333536	ProteinID:AAT77863.1	ProteinID:AAT85277.1	ProteinID:ABF97818.1	EMBL:AK111569
ProteinID:BAF12651.1	ProteinID:BAS85419.1	ProteinID:EEE59562.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	EnsemblPlantsGene:Os03g0639600	EnsemblPlants:Os03t0639600-01	PFAM:PF06943	PANTHER:PTHR31747	PANTHER:PTHR31747:SF13
UniProt:Q6ASS2	TIGRFAMs:TIGR01053	UniParc:UPI00003FE6A5	RefSeq:XP_015628086.1	InterPro:Znf_LSD1	SEG:seg

Description

OsLSD2Similar to Zinc-finger protein Lsd1. (Os03t0639600-01)

Coordinates

chr3:-:24574540..24579212

Molecular Weight (calculated)

19467.6 Da

IEP (calculated)

8.435

GRAVY (calculated)

0.051

Length

186 amino acids

Sequence
(BLAST)

001: MQSQIVCHGC RSVLRYPSGA PSVCCALCQA ITTVPPPAPV MEMAHLICGG CRTLLMYTRN ADTVRCSCCS TVNLVRPVNN IAHVSCGQCR TTLMYPYGAP
101: SVKCAICHYI TNTGMNTVAP TPSPMPTSSG SSYNAPPSGS SYNAPPPTSA PTSRPQNVTV VVENPMTVDE KGKLVSNVVV GVTTGK

Best Arabidopsis Sequence Match ( AT4G20380.7 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.