CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 3
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59208	Soybean	extracellular	98.87	98.87
KRH37706	Soybean	mitochondrion	83.05	84.48
KRH12749	Soybean	extracellular	80.79	70.79
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	64.41	70.37
PGSC0003DMT400054616	Potato	extracellular	68.93	70.11
CDX98669	Canola	cytosol	74.01	68.59
Bra038804.1-P	Field mustard	cytosol	74.01	67.53
CDX94003	Canola	mitochondrion	73.45	67.36
CDX76459	Canola	cytosol	67.8	66.67
CDX78991	Canola	cytosol	71.75	66.49
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	71.75	65.46
Bra013460.1-P	Field mustard	cytosol	71.19	65.28
GSMUA_Achr7P00950_001	Banana	mitochondrion	64.97	64.25
Bra020924.1-P	Field mustard	cytosol	45.2	63.49
Os12t0611000-01	Rice	plastid	60.45	62.21
TraesCS5D01G059500.1	Wheat	mitochondrion	62.71	62.01
TraesCS5B01G054000.1	Wheat	mitochondrion	62.71	62.01
EER91186	Sorghum	extracellular, mitochondrion, peroxisome, plastid	60.45	61.14
Os03t0639600-01	Rice	mitochondrion, plastid	63.84	60.75
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	57.06	60.48
GSMUA_Achr7P08020_001	Banana	mitochondrion	61.02	60.34
AT4G20380.8	Thale cress	extracellular	70.06	59.05
Zm00001d033262_P001	Maize	extracellular	63.28	58.95
TraesCS5B01G379800.1	Wheat	mitochondrion	59.89	58.89
TraesCS5A01G376200.1	Wheat	mitochondrion	59.89	58.89
TraesCS5D01G386200.2	Wheat	mitochondrion	59.89	58.56
TraesCS5A01G048900.1	Wheat	cytosol, mitochondrion	63.28	56.85
GSMUA_Achr6P31340_001	Banana	cytosol	37.29	53.66
KRH04330	Soybean	plastid	44.63	52.67
KRH77212	Soybean	plastid	43.5	52.38
Os08t0130100-01	Rice	cytosol	42.94	51.7
OQU79832	Sorghum	mitochondrion	45.2	50.0
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	71.19	48.65
Zm00001d035195_P001	Maize	mitochondrion	40.11	47.33
CDY49490	Canola	plastid	63.28	46.47
TraesCS7A01G310500.1	Wheat	cytosol	34.46	46.21
HORVU7Hr1G074030.2	Barley	cytosol	34.46	46.21
HORVU5Hr1G093280.4	Barley	mitochondrion	59.89	46.09
Zm00001d049625_P001	Maize	plastid	30.51	45.76
KRH58208	Soybean	plastid	31.64	45.53
TraesCS7D01G307000.1	Wheat	cytosol	33.9	45.45
KXG23966	Sorghum	mitochondrion	64.41	43.68
KRH50040	Soybean	cytosol	28.81	39.84
Zm00001d041474_P001	Maize	mitochondrion	61.02	34.95

Protein Annotations

EMBL:ACUP02004845	EMBL:ACUP02004846	EnsemblPlants:KRH43079	EnsemblPlantsGene:GLYMA_08G129400	EntrezGene:100527656	InterPro:Znf_LSD1
PANTHER:PTHR31747	PANTHER:PTHR31747:SF3	PFAM:PF06943	ProteinID:KRH43079	ProteinID:KRH43079.1	SEG:seg
TIGRFAMs:TIGR01053	UniParc:UPI000189D22C	UniProt:A0A0R4J3W9	MapMan:27.2.1	:	:

Description

hypothetical protein

Coordinates

chr8:+:9960897..9965698

Molecular Weight (calculated)

18724.7 Da

IEP (calculated)

8.551

GRAVY (calculated)

0.002

Length

177 amino acids

Sequence
(BLAST)

001: MQSQVVCNGC RSLLLYPRGA TNVCCALCNT ITSVPPPGME MSQLYCGGCR TLLMYTRGAT SVRCSCCHTV NLVPPASNQV AHVHCGNCRT TLMYPYGAPS
101: VKCALCHFIT NVSTNNGRLP IPVHRPNGTN NAGTLPSTST SMPQSQSQTV VVENPMSVDS SGKLVSNVVV GVTTDKK

Best Arabidopsis Sequence Match ( AT4G20380.7 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.