CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol, plastid, mitochondrion

Predictor Summary:

extracellular 2
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78991	Canola	cytosol	95.88	97.38
Bra013460.1-P	Field mustard	cytosol	96.39	96.89
CDX98669	Canola	cytosol	84.54	85.86
CDX94003	Canola	mitochondrion	84.02	84.46
CDX76459	Canola	cytosol	75.26	81.11
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	62.37	72.46
AT4G20380.8	Thale cress	extracellular	78.35	72.38
KRH43079	Soybean	extracellular	65.46	71.75
KRH59208	Soybean	extracellular	64.95	71.19
KRH37706	Soybean	mitochondrion	62.37	69.54
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	54.64	65.43
PGSC0003DMT400054616	Potato	extracellular	57.73	64.37
Os12t0611000-01	Rice	plastid	56.19	63.37
KRH12749	Soybean	extracellular	62.89	60.4
TraesCS5D01G059500.1	Wheat	mitochondrion	55.15	59.78
TraesCS5B01G054000.1	Wheat	mitochondrion	55.15	59.78
GSMUA_Achr7P00950_001	Banana	mitochondrion	53.09	57.54
Os03t0639600-01	Rice	mitochondrion, plastid	53.61	55.91
GSMUA_Achr7P08020_001	Banana	mitochondrion	51.55	55.87
CDX73255	Canola	extracellular	26.29	55.43
EER91186	Sorghum	extracellular, mitochondrion, peroxisome, plastid	50.0	55.43
TraesCS5A01G376200.1	Wheat	mitochondrion	51.03	55.0
TraesCS5D01G386200.2	Wheat	mitochondrion	51.03	54.7
GSMUA_Achr6P31340_001	Banana	cytosol	34.54	54.47
TraesCS5B01G379800.1	Wheat	mitochondrion	50.52	54.44
TraesCS5A01G048900.1	Wheat	cytosol, mitochondrion	55.15	54.31
Zm00001d033262_P001	Maize	extracellular	52.58	53.68
CDY49490	Canola	plastid	64.43	51.87
Os08t0130100-01	Rice	cytosol	37.63	49.66
CDY26902	Canola	endoplasmic reticulum, extracellular	38.14	48.05
Zm00001d035195_P001	Maize	mitochondrion	35.57	46.0
TraesCS7A01G310500.1	Wheat	cytosol	30.93	45.45
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	59.28	44.4
Zm00001d049625_P001	Maize	plastid	26.8	44.07
HORVU7Hr1G074030.2	Barley	cytosol	29.9	43.94
CDY01267	Canola	mitochondrion	16.49	43.84
OQU79832	Sorghum	mitochondrion	36.08	43.75
TraesCS7D01G307000.1	Wheat	cytosol	29.38	43.18
HORVU5Hr1G093280.4	Barley	mitochondrion	51.03	43.04
KXG23966	Sorghum	mitochondrion	53.09	39.46
CDY68066	Canola	plastid	25.26	34.75
Zm00001d041474_P001	Maize	mitochondrion	52.58	33.01
CDX76435	Canola	cytosol	24.23	30.52
CDY31418	Canola	plastid	24.23	19.26

Protein Annotations

EnsemblPlants:CDX82760	EnsemblPlantsGene:GSBRNA2T00138078001	InterPro:Znf_LSD1	PANTHER:PTHR31747	PANTHER:PTHR31747:SF3	PFAM:PF06943
ProteinID:CDX82760	ProteinID:CDX82760.1	SEG:seg	TIGRFAMs:TIGR01053	UniParc:UPI0004EED9A4	MapMan:27.2.1

Description

BnaC01g12100D

Coordinates

chrLK031830:+:34605..36472

Molecular Weight (calculated)

20488.9 Da

IEP (calculated)

8.622

GRAVY (calculated)

-0.140

Length

194 amino acids

Sequence
(BLAST)

001: MQDQLVCHGC RNTLMYPRGA TNVRCALCHI VNMVPLHPHP PPPPPPHHAH AGMDMAHIVC GGCRTMLMYT RGASSVRCSC CQTVNLVPGP PPSNQVAHIN
101: CGNCRTTLMY PYGASSVKCA VCQFVTNVNM SNGRVPLASN RPNGTAAPGT MPSTSTQSTP PSQTQTVVVE NPMSVNESGK LVSNVVVGVT TGQK

Best Arabidopsis Sequence Match ( AT4G20380.7 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.