CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G21610.1	Thale cress	cytosol, nucleus, plastid	57.79	57.42
GSMUA_Achr7P24410_001	Banana	mitochondrion	32.47	54.95
CDY31418	Canola	plastid	86.36	54.51
Bra020902.1-P	Field mustard	cytosol	49.35	54.29
KRH50040	Soybean	cytosol	39.61	47.66
VIT_00s0181g00230.t01	Wine grape	cytosol	43.51	47.52
CDX73255	Canola	extracellular	26.62	44.57
CDY26902	Canola	endoplasmic reticulum, extracellular	31.17	31.17
CDY01267	Canola	mitochondrion	14.29	30.14
CDX98669	Canola	cytosol	33.12	26.7
CDX94003	Canola	mitochondrion	33.12	26.42
CDX76459	Canola	cytosol	30.52	26.11
CDX78991	Canola	cytosol	30.52	24.61
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	30.52	24.23
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	25.97	23.95
CDY68066	Canola	plastid	20.78	22.7
CDY49490	Canola	plastid	29.87	19.09
PGSC0003DMT400076422	Potato	nucleus	47.4	18.67
Solyc02g078270.2.1	Tomato	nucleus	45.45	18.52
Os01t0612700-01	Rice	nucleus	33.12	5.81
KXG32887	Sorghum	nucleus	32.47	5.64
Zm00001d044463_P001	Maize	nucleus	31.17	5.41
TraesCS3D01G233000.2	Wheat	nucleus	11.69	1.99
TraesCS3A01G219500.1	Wheat	nucleus	7.14	1.69
TraesCS3B01G250000.3	Wheat	nucleus	8.44	1.49

Protein Annotations

EnsemblPlants:CDX76435	EnsemblPlantsGene:GSBRNA2T00126841001	InterPro:Znf_LSD1	ncoils:Coil	PANTHER:PTHR31747	PANTHER:PTHR31747:SF4
PFAM:PF06943	ProteinID:CDX76435	ProteinID:CDX76435.1	SEG:seg	TIGRFAMs:TIGR01053	UniParc:UPI0004EE3CE0
MapMan:27.2.1	:	:	:	:	:

Description

BnaA08g09650D

Coordinates

chrLK031807:+:1162635..1163941

Molecular Weight (calculated)

16945.2 Da

IEP (calculated)

4.694

GRAVY (calculated)

-0.416

Length

154 amino acids

Sequence
(BLAST)

001: MIAEAETKDT MEEIQTQKKE EDEDEEEGPP PGWESTVLPP PPIAAVTTAV NSTTAAEISE MAQMVCGSCR RLLSYPRGTK HVKCSCCQTV NLVLEAYQVG
101: QVKCSNCELL LMYPYGAPSV RCSSCKSVTD IREDNKRPPW SVLQGPLKTF SSVR

Best Arabidopsis Sequence Match ( AT4G21610.1 )
(BLAST)

001: MEEIQQQTQK EEQKHREEEE EEEEGPPPGW ESAVLPPPIV TITAAVNPNP TTVEIPEKAQ MVCGSCRRLL SYLRGSKHVK CSSCQTVNLV LEANQVGQVN
101: CNNCKLLLMY PYGAPAVRCS SCNSVTDISE NNKRPPWSEQ QGPLKSLSSL RRAEN

Arabidopsis Description

LOL2Protein LOL2 [Source:UniProtKB/Swiss-Prot;Acc:O65426]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.