Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
17404758
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P24410_001 | Banana | mitochondrion | 5.92 | 57.14 |
| KRH50040 | Soybean | cytosol | 6.95 | 47.66 |
| VIT_00s0181g00230.t01 | Wine grape | cytosol | 6.72 | 41.84 |
| Bra020902.1-P | Field mustard | cytosol | 6.61 | 41.43 |
| AT4G21610.1 | Thale cress | cytosol, nucleus, plastid | 6.26 | 35.48 |
| CDX76435 | Canola | cytosol | 5.81 | 33.12 |
| Os12t0611000-01 | Rice | plastid | 5.24 | 26.74 |
| Os08t0159500-01 | Rice | nucleus | 5.47 | 26.09 |
| Os03t0639600-01 | Rice | mitochondrion, plastid | 5.24 | 24.73 |
| KXG32887 | Sorghum | nucleus | 23.58 | 23.36 |
| Zm00001d044463_P001 | Maize | nucleus | 22.89 | 22.66 |
| TraesCS3D01G233000.2 | Wheat | nucleus | 22.78 | 22.15 |
| PGSC0003DMT400076422 | Potato | nucleus | 9.79 | 21.99 |
| Solyc02g078270.2.1 | Tomato | nucleus | 9.34 | 21.69 |
| CDY31418 | Canola | plastid | 5.92 | 21.31 |
| TraesCS3B01G250000.3 | Wheat | nucleus | 21.07 | 21.19 |
| Os08t0130100-01 | Rice | cytosol | 3.42 | 20.41 |
| TraesCS3A01G219500.1 | Wheat | nucleus | 6.61 | 8.94 |
Protein Annotations
| EnsemblPlants:Os01t0612700-01 | EnsemblPlantsGene:Os01g0612700 | InterPro:Znf_LSD1 | PANTHER:PTHR31747 | PANTHER:PTHR31747:SF4 | PFAM:PF06943 |
| ProteinID:BAS73133.1 | SEG:seg | TIGRFAMs:TIGR01053 | UniParc:UPI0003938D3A | UniProt:A0A0P0V571 | MapMan:27.2.1 |
Description
LSD1-LIKE ZINC FINGER PROTEINZinc finger, LSD1-type domain containing protein. (Os01t0612700-01);LSD1-like-type zinc finger protein, Disease resistance, Saline-alkaline stress resistance (Os01t0612700-02)
Coordinates
chr1:+:24294290..24299500
Molecular Weight (calculated)
92258.6 Da
IEP (calculated)
3.872
GRAVY (calculated)
-0.197
Length
878 amino acids
Sequence
(BLAST)
(BLAST)
001: AASVSPVLDS GDPDAAEVDV VVGMQEQAAG SALAMLVTYG ETDTSAVSVS PVLESGEPDA AQIDVVAGMQ EEAPGSMLAM EVTYREVDAA TVSVSPVLES
101: VEPDAAKIDV VARMQEEAPG SKLAMEVMYG ETGTAAVSVP LVLESREEGS LQESMQRPSS PTMNIEQESM QRPFSPTIGT ETSSPEMAPA GSENCKVSWL
201: PLPPPTPLGE SMPSLPVAAA PKVLLVMPEE AVESVPSSEA LDVEKPASIT QAEPSSPNTP PPGFENFKSS WLPLPTTPPP VETTDVLPDV VVTKAVEAPI
301: EEVSRPLPAL EVTNMESDTV LSILPTTVLP TEGTEGLLQQ PLLRPPSPVV QSEPCLQNEM APPGFENFKS SSEPCSAEEI APPGSDNFKS SSEPCLPEEM
401: APPGFENFKS SSEPCSQEEM APPGFENFKS SWPPLPTLPQ TVPDAAAADA LAATVEEAAG PPPALELEAM DVDMDAIHPP PLPFDSGVES LQKPLPRAPS
501: PIMQEAPCSP DRAPPGFETY KSSQLLLPSP SLAQTTNVRQ DQSVTEPVSV IEEAPQLLHS VEVMGVHMDA VPPLLPSSES GADGLSPQQF AQPPPAEKDT
601: TTCLPDMVHS GCDNSEPSQL LSLPAVISPV QTPDGLADVP AIDRVAVALE ESPQRPLVSG EMEAGTVPIR SSPLKNISEG SLPQLESESH SPTSQAADSL
701: LDASDSKSVA VASEEMSQLP LASQATTTDL VSTTAMQPQS EGIVDESLQP QHPPSSTAHD SPCLQDSVPL VPPPPSPYLN KEVGQMVCGS CRILLAYFRG
801: AGYVHCTCCQ TMNYVLEAHE VGKVHCGHCA TLLMYPFGAP AVKCSLCLFV TEIGERNVRR RLSIEQPTRT NSSGLAEA
101: VEPDAAKIDV VARMQEEAPG SKLAMEVMYG ETGTAAVSVP LVLESREEGS LQESMQRPSS PTMNIEQESM QRPFSPTIGT ETSSPEMAPA GSENCKVSWL
201: PLPPPTPLGE SMPSLPVAAA PKVLLVMPEE AVESVPSSEA LDVEKPASIT QAEPSSPNTP PPGFENFKSS WLPLPTTPPP VETTDVLPDV VVTKAVEAPI
301: EEVSRPLPAL EVTNMESDTV LSILPTTVLP TEGTEGLLQQ PLLRPPSPVV QSEPCLQNEM APPGFENFKS SSEPCSAEEI APPGSDNFKS SSEPCLPEEM
401: APPGFENFKS SSEPCSQEEM APPGFENFKS SWPPLPTLPQ TVPDAAAADA LAATVEEAAG PPPALELEAM DVDMDAIHPP PLPFDSGVES LQKPLPRAPS
501: PIMQEAPCSP DRAPPGFETY KSSQLLLPSP SLAQTTNVRQ DQSVTEPVSV IEEAPQLLHS VEVMGVHMDA VPPLLPSSES GADGLSPQQF AQPPPAEKDT
601: TTCLPDMVHS GCDNSEPSQL LSLPAVISPV QTPDGLADVP AIDRVAVALE ESPQRPLVSG EMEAGTVPIR SSPLKNISEG SLPQLESESH SPTSQAADSL
701: LDASDSKSVA VASEEMSQLP LASQATTTDL VSTTAMQPQS EGIVDESLQP QHPPSSTAHD SPCLQDSVPL VPPPPSPYLN KEVGQMVCGS CRILLAYFRG
801: AGYVHCTCCQ TMNYVLEAHE VGKVHCGHCA TLLMYPFGAP AVKCSLCLFV TEIGERNVRR RLSIEQPTRT NSSGLAEA
001: MEEIQQQTQK EEQKHREEEE EEEEGPPPGW ESAVLPPPIV TITAAVNPNP TTVEIPEKAQ MVCGSCRRLL SYLRGSKHVK CSSCQTVNLV LEANQVGQVN
101: CNNCKLLLMY PYGAPAVRCS SCNSVTDISE NNKRPPWSEQ QGPLKSLSSL RRAEN
101: CNNCKLLLMY PYGAPAVRCS SCNSVTDISE NNKRPPWSEQ QGPLKSLSSL RRAEN
Arabidopsis Description
LOL2Protein LOL2 [Source:UniProtKB/Swiss-Prot;Acc:O65426]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.