Factsheet for Os12t0611000-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G059500.1	Wheat	mitochondrion	83.72	80.45
TraesCS5B01G054000.1	Wheat	mitochondrion	83.14	79.89
TraesCS5A01G048900.1	Wheat	cytosol, mitochondrion	83.14	72.59
Os03t0639600-01	Rice	mitochondrion, plastid	72.09	66.67
KRH59208	Soybean	extracellular	62.79	61.02
KRH43079	Soybean	extracellular	62.21	60.45
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	56.4	59.88
Bra020924.1-P	Field mustard	cytosol	43.02	58.73
GSMUA_Achr7P00950_001	Banana	mitochondrion	61.05	58.66
PGSC0003DMT400054616	Potato	extracellular	58.72	58.05
CDX76459	Canola	cytosol	60.47	57.78
KRH37706	Soybean	mitochondrion	58.14	57.47
CDX78991	Canola	cytosol	63.37	57.07
CDX98669	Canola	cytosol	62.79	56.54
Bra013460.1-P	Field mustard	cytosol	63.37	56.48
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	63.37	56.19
Bra038804.1-P	Field mustard	cytosol	62.79	55.67
CDX94003	Canola	mitochondrion	61.05	54.4
KXG23966	Sorghum	mitochondrion	79.07	52.11
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	50.58	52.1
KRH12749	Soybean	extracellular	60.47	51.49
AT4G20380.8	Thale cress	extracellular	60.47	49.52
Os08t0130100-01	Rice	cytosol	40.12	46.94
Zm00001d041474_P001	Maize	mitochondrion	75.0	41.75
CDY49490	Canola	plastid	56.4	40.25
Os08t0159500-01	Rice	nucleus	42.44	39.67
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	59.3	39.38
Os01t0612700-01	Rice	nucleus	26.74	5.24

Protein Annotations

EMBL:AK111837	EnsemblPlants:Os12t0611000-01	EnsemblPlantsGene:Os12g0611000	EntrezGene:4352767	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:Znf_LSD1	PANTHER:PTHR31747	PANTHER:PTHR31747:SF13	PFAM:PF06943
ProteinID:ABA99369.1	ProteinID:BAF30269.1	ProteinID:BAT18036.1	ProteinID:EEE53591.1	RefSeq:XP_015620418.1	SEG:seg
TIGRFAMs:TIGR01053	UniParc:UPI0000680C54	UniProt:Q2QMB3	MapMan:27.2.1	:	:

Description

LSD1-like 1Similar to Zinc-finger protein Lsd1. (Os12t0611000-01)

Coordinates

chr12:-:25815277..25818855

Molecular Weight (calculated)

18055.1 Da

IEP (calculated)

8.551

GRAVY (calculated)

0.176

Length

172 amino acids

Sequence
(BLAST)

001: MQSQIVCHGC RNILLYPRGA PSVCCAVCHA VSSTAPSPGM DIAHLICGGC RTLLMYTRNA TSVRCSCCDT VNLVRPVSSI AHLNCGQCQT VLMYPYGAPS
101: VKCAICNFIT NTGMNTMRHL PPNGTSYTAP STSAPTTQSQ NVTVVVENPM TVDAKGKLVS NVVVGVTTGG KK

Best Arabidopsis Sequence Match ( AT4G20380.7 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.