Factsheet for Os08t0130100-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	extracellular, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035195_P001	Maize	mitochondrion	67.35	66.0
TraesCS7A01G310500.1	Wheat	cytosol	57.82	64.39
OQU79832	Sorghum	mitochondrion	69.39	63.75
HORVU7Hr1G074030.2	Barley	cytosol	57.14	63.64
Zm00001d049625_P001	Maize	plastid	51.02	63.56
TraesCS7D01G307000.1	Wheat	cytosol	56.46	62.88
Bra020924.1-P	Field mustard	cytosol	40.82	47.62
KRH59208	Soybean	extracellular	51.7	42.94
KRH43079	Soybean	extracellular	51.7	42.94
KRH37706	Soybean	mitochondrion	50.34	42.53
PGSC0003DMT400054616	Potato	extracellular	50.34	42.53
Os03t0639600-01	Rice	mitochondrion, plastid	52.38	41.4
CDX76459	Canola	cytosol	50.34	41.11
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	44.9	40.74
GSMUA_Achr7P08020_001	Banana	mitochondrion	48.98	40.22
Os12t0611000-01	Rice	plastid	46.94	40.12
GSMUA_Achr6P31340_001	Banana	cytosol	33.33	39.84
CDX98669	Canola	cytosol	51.02	39.27
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	44.22	38.92
CDX94003	Canola	mitochondrion	51.02	38.86
CDX78991	Canola	cytosol	49.66	38.22
Bra038804.1-P	Field mustard	cytosol	50.34	38.14
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	49.66	37.63
Bra013460.1-P	Field mustard	cytosol	48.98	37.31
KRH12749	Soybean	extracellular	51.02	37.13
AT4G20380.8	Thale cress	extracellular	51.7	36.19
CDY49490	Canola	plastid	49.66	30.29
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	52.38	29.73
Os08t0159500-01	Rice	nucleus	36.05	28.8
Os01t0612700-01	Rice	nucleus	20.41	3.42

Protein Annotations

MapMan:27.2.1	EntrezGene:4344587	EMBL:AK120454	ProteinID:BAC66720.1	ProteinID:BAF22834.1	ProteinID:BAT03692.1
ProteinID:EEE67990.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:Os08g0130100
EnsemblPlants:Os08t0130100-01	PFAM:PF06943	PANTHER:PTHR31747	PANTHER:PTHR31747:SF5	UniProt:Q84UR0	TIGRFAMs:TIGR01053
UniParc:UPI000017D1CA	RefSeq:XP_015648991.1	InterPro:Znf_LSD1	:	:	:

Description

OsLSD3Zinc finger, LSD1-type domain containing protein. (Os08t0130100-01)

Coordinates

chr8:-:1686254..1688804

Molecular Weight (calculated)

15915.3 Da

IEP (calculated)

8.875

GRAVY (calculated)

-0.139

Length

147 amino acids

Sequence
(BLAST)

001: MQDQLICSGC RRVVQYRRGV AGVCCPGCNT LTAVNPSAVA DMSELICSGC PTLLFYNRGA SNIRCPSCNR LNSTRSANQI AHLTCGQCRT TLMHPPGAST
101: VQCATCRYVN HVRDARPQTV LVENPKTLDD KGKLVSNVVV GVTSWKR

Best Arabidopsis Sequence Match ( AT4G20380.7 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.