Factsheet for GSMUA_Achr6P31340_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020924.1-P	Field mustard	cytosol	49.59	48.41
GSMUA_Achr7P08020_001	Banana	mitochondrion	67.48	46.37
GSMUA_Achr7P00950_001	Banana	mitochondrion	61.79	42.46
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	51.22	37.72
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	49.59	37.65
KRH43079	Soybean	extracellular	53.66	37.29
KRH59208	Soybean	extracellular	53.66	37.29
CDX98669	Canola	cytosol	57.72	37.17
HORVU7Hr1G074030.2	Barley	cytosol	39.84	37.12
TraesCS7A01G310500.1	Wheat	cytosol	39.84	37.12
KRH37706	Soybean	mitochondrion	52.03	36.78
Zm00001d049625_P001	Maize	plastid	34.96	36.44
TraesCS7D01G307000.1	Wheat	cytosol	39.02	36.36
CDX94003	Canola	mitochondrion	56.91	36.27
CDX76459	Canola	cytosol	52.85	36.11
Bra038804.1-P	Field mustard	cytosol	56.91	36.08
CDX78991	Canola	cytosol	54.47	35.08
PGSC0003DMT400054616	Potato	extracellular	49.59	35.06
Bra013460.1-P	Field mustard	cytosol	54.47	34.72
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	54.47	34.54
Os08t0130100-01	Rice	cytosol	39.84	33.33
GSMUA_Achr7P24410_001	Banana	mitochondrion	22.76	30.77
KRH12749	Soybean	extracellular	50.41	30.69
Zm00001d035195_P001	Maize	mitochondrion	37.4	30.67
AT4G20380.8	Thale cress	extracellular	52.03	30.48
OQU79832	Sorghum	mitochondrion	38.21	29.38
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	61.79	29.34
CDY49490	Canola	plastid	52.03	26.56
GSMUA_Achr7P04710_001	Banana	plastid	30.08	26.24
GSMUA_AchrUn_...	Banana	plastid	30.08	24.67
GSMUA_Achr3P27560_001	Banana	extracellular	30.89	18.36

Protein Annotations

EnsemblPlants:GSMUA_Achr6P31340_001	EnsemblPlants:GSMUA_Achr6T31340_001	EnsemblPlantsGene:GSMUA_Achr6G31340_001	InterPro:Znf_LSD1	PANTHER:PTHR31747	PANTHER:PTHR31747:SF3
PFAM:PF06943	SEG:seg	TIGRFAMs:TIGR01053	UniParc:UPI000296AE1A	UniProt:M0TBS9	MapMan:27.2.1

Description

LSD1 zinc finger domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G31340_001]

Coordinates

chr6:+:31171656..31172818

Molecular Weight (calculated)

13269.2 Da

IEP (calculated)

8.588

GRAVY (calculated)

-0.063

Length

123 amino acids

Sequence
(BLAST)

001: MLMYANGATS VRCSCCDTMN MTGSANQVAH LNCVQCHPIL MYPYGAPCVK CAICNYITNA GMHNMRFPIH VAHRPNEPTP VPPSTSPSSR ASNMTVVVEN
101: PMSVNENGKL VSNVVVGVTT RKK

Best Arabidopsis Sequence Match ( AT4G20380.2 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.