Factsheet for GSMUA_Achr3P27560_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 3
vacuole 4
plasma membrane 4
golgi 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32540.1	GSMUA_Achr11P...	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14592	Sorghum	plastid	60.87	88.11
Solyc08g077060.2.1	Tomato	plastid	61.35	87.59
TraesCS1D01G278800.2	Wheat	plastid	61.35	86.99
TraesCS1B01G288600.3	Wheat	plastid	61.35	86.99
TraesCS1A01G279500.3	Wheat	plastid	61.35	86.99
GSMUA_Achr7P04710_001	Banana	plastid	58.45	85.82
KRH77212	Soybean	plastid	58.45	82.31
GSMUA_AchrUn_...	Banana	plastid	58.94	81.33
PGSC0003DMT400045143	Potato	plastid	57.97	78.95
KRH04330	Soybean	plastid	56.52	78.0
Bra010171.1-P	Field mustard	plastid	57.0	75.16
KRH58208	Soybean	plastid	41.06	69.11
Os08t0159500-01	Rice	nucleus	61.35	69.02
VIT_02s0012g00990.t01	Wine grape	cytosol, extracellular, plastid	59.42	64.4
AT1G32540.1	Thale cress	extracellular	52.66	58.29
CDY68066	Canola	plastid	37.68	55.32
HORVU1Hr1G073170.3	Barley	plastid	63.77	46.64
GSMUA_Achr7P24410_001	Banana	mitochondrion	20.29	46.15
GSMUA_Achr7P00950_001	Banana	mitochondrion	38.16	44.13
GSMUA_Achr7P08020_001	Banana	mitochondrion	33.82	39.11
Zm00001d049525_P004	Maize	plastid	35.75	36.82
GSMUA_Achr6P31340_001	Banana	cytosol	18.36	30.89

Protein Annotations

EnsemblPlants:GSMUA_Achr3P27560_001	EnsemblPlants:GSMUA_Achr3T27560_001	EnsemblPlantsGene:GSMUA_Achr3G27560_001	InterPro:Multihaem_cyt_sf	InterPro:Znf_LSD1	PANTHER:PTHR31747
PANTHER:PTHR31747:SF1	PFAM:PF06943	SEG:seg	SUPFAM:SSF48695	TIGRFAMs:TIGR01053	UniParc:UPI000295A037
UniProt:M0SIC2	MapMan:27.2.1	:	:	:	:

Description

LSD1 zinc finger domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G27560_001]

Coordinates

chr3:+:27090094..27093041

Molecular Weight (calculated)

22157.5 Da

IEP (calculated)

8.284

GRAVY (calculated)

0.321

Length

207 amino acids

Sequence
(BLAST)

001: MALMEIVGFR RLLQLSILPF WFPLKGNMNK NPSFLTQIGD GSANLCLMLK EDTVLGRRIR HKPEMPVPLV PYPTPPVPFT PPNGGQSQLV CSGCRNLLLY
101: PLGATSVCCA VCSAVTAVPP PGTEMAQLIC GGCHTLLMFI RGATSVQCSC CHTVNLALEA NQVAHVNCGS CHMLLMYQYG ARSVKCAVCS FVTSVGALPS
201: TEQKPSS

Best Arabidopsis Sequence Match ( AT1G32540.1 )
(BLAST)

001: MHTWKNQIFS DSQFVLLFMG KNCSIIFPEP HLFISHVFII HLNVLFLVKK INKNNLRFVG STSGQSQLVC SGCRNLLMYP VGATSVCCAV CNAVTAVPPP
101: GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLALEAN QVAHVNCGNC MMLLMYQYGA RSVKCAVCNF VTSVGGSTST TDSKFNN

Arabidopsis Description

LOL1lsd one like 1 [Source:TAIR;Acc:AT1G32540]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.