Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plasma membrane 2
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g077060.2.1 | Tomato | plastid | 67.02 | 88.28 |
| EES14592 | Sorghum | plastid | 63.35 | 84.62 |
| TraesCS1D01G278800.2 | Wheat | plastid | 64.4 | 84.25 |
| TraesCS1B01G288600.3 | Wheat | plastid | 64.4 | 84.25 |
| TraesCS1A01G279500.3 | Wheat | plastid | 64.4 | 84.25 |
| KRH04330 | Soybean | plastid | 64.92 | 82.67 |
| GSMUA_Achr7P04710_001 | Banana | plastid | 60.73 | 82.27 |
| PGSC0003DMT400045143 | Potato | plastid | 65.44 | 82.24 |
| KRH77212 | Soybean | plastid | 62.83 | 81.63 |
| Bra010171.1-P | Field mustard | plastid | 61.78 | 75.16 |
| GSMUA_AchrUn_... | Banana | plastid | 58.12 | 74.0 |
| KRH58208 | Soybean | plastid | 45.55 | 70.73 |
| Os08t0159500-01 | Rice | nucleus | 65.44 | 67.93 |
| AT1G32540.1 | Thale cress | extracellular | 59.16 | 60.43 |
| GSMUA_Achr3P27560_001 | Banana | extracellular | 64.4 | 59.42 |
| CDY68066 | Canola | plastid | 42.41 | 57.45 |
| HORVU1Hr1G073170.3 | Barley | plastid | 65.44 | 44.17 |
| Zm00001d049525_P004 | Maize | plastid | 40.84 | 38.81 |
| VIT_00s0181g00230.t01 | Wine grape | cytosol | 26.18 | 35.46 |
| VIT_10s0092g00230.t01 | Wine grape | extracellular, plasma membrane | 44.5 | 32.82 |
Protein Annotations
| EntrezGene:100243854 | wikigene:100243854 | MapMan:27.2.1 | EMBL:AM444702 | ProteinID:CAN76365 | ProteinID:CAN76365.1 |
| ProteinID:CCB57921 | ProteinID:CCB57921.1 | UniProt:F6HTB1 | EMBL:FN596247 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008219 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0031348 | GO:GO:0034051 | GO:GO:0045595 |
| EntrezGene:LOC100243854 | wikigene:LOC100243854 | InterPro:Multihaem_cyt_sf | PFAM:PF06943 | SUPFAM:SSF48695 | TIGR:TC66518 |
| TIGRFAMs:TIGR01053 | UniParc:UPI0002108062 | ArrayExpress:VIT_02s0012g00990 | EnsemblPlantsGene:VIT_02s0012g00990 | EnsemblPlants:VIT_02s0012g00990.t01 | unigene:Vvi.15447 |
| RefSeq:XP_002281099 | RefSeq:XP_002281099.1 | InterPro:Znf_LSD1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2:-:6931509..6934966
Molecular Weight (calculated)
20666.3 Da
IEP (calculated)
8.595
GRAVY (calculated)
0.124
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MYGFEWKFFQ LGNGNGEDGR NIDAVWAKGR KLLRAWQRKH TLARITMPVP LAPYPTPPVP FTQPANGAQS QLVCSGCRNL LLYPVGAKSV CCAVCNVVTA
101: VPLPGTEMAQ LVCGGCHTLL MYIRGATSVQ CSCCHTINLA LEANQVAHVN CGNCRMLLMY QYGARSVKCA VCNFVTSVGA STSSTEHKFN C
101: VPLPGTEMAQ LVCGGCHTLL MYIRGATSVQ CSCCHTINLA LEANQVAHVN CGNCRMLLMY QYGARSVKCA VCNFVTSVGA STSSTEHKFN C
001: MPVPLAPYPT PPAPALAPSY NTPPANGSTS GQSQLVCSGC RNLLMYPVGA TSVCCAVCNA VTAVPPPGTE MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV
101: NLALEANQVA HVNCGNCMML LMYQYGARSV KCAVCNFVTS VGGSTSTTDS KFNN
101: NLALEANQVA HVNCGNCMML LMYQYGARSV KCAVCNFVTS VGGSTSTTDS KFNN
Arabidopsis Description
LOL1lsd one like 1 [Source:TAIR;Acc:AT1G32540]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.