Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
- plastid 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g008230.2.1 | |
| Solyc04g009180.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G32540.1 | Solyc01g008230.2.1 | AT5G08330.1 | 21798944 |
| AT1G32540.1 | Solyc04g009180.1.1 | AT5G08330.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14592 | Sorghum | plastid | 86.9 | 88.11 |
| PGSC0003DMT400045143 | Potato | plastid | 90.34 | 86.18 |
| TraesCS1D01G278800.2 | Wheat | plastid | 86.21 | 85.62 |
| TraesCS1B01G288600.3 | Wheat | plastid | 86.21 | 85.62 |
| TraesCS1A01G279500.3 | Wheat | plastid | 86.21 | 85.62 |
| KRH77212 | Soybean | plastid | 86.21 | 85.03 |
| GSMUA_Achr7P04710_001 | Banana | plastid | 82.07 | 84.4 |
| KRH04330 | Soybean | plastid | 86.21 | 83.33 |
| GSMUA_AchrUn_... | Banana | plastid | 81.38 | 78.67 |
| Bra010171.1-P | Field mustard | plastid | 84.14 | 77.71 |
| KRH58208 | Soybean | plastid | 62.07 | 73.17 |
| Os08t0159500-01 | Rice | nucleus | 86.21 | 67.93 |
| VIT_02s0012g00990.t01 | Wine grape | cytosol, extracellular, plastid | 88.28 | 67.02 |
| AT1G32540.1 | Thale cress | extracellular | 80.69 | 62.57 |
| GSMUA_Achr3P27560_001 | Banana | extracellular | 87.59 | 61.35 |
| CDY68066 | Canola | plastid | 56.55 | 58.16 |
| HORVU1Hr1G073170.3 | Barley | plastid | 86.21 | 44.17 |
| Solyc02g069720.2.1 | Tomato | extracellular, mitochondrion | 48.97 | 43.83 |
| Zm00001d049525_P004 | Maize | plastid | 54.48 | 39.3 |
| Solyc02g078270.2.1 | Tomato | nucleus | 33.1 | 12.7 |
Protein Annotations
| EnsemblPlants:Solyc08g077060.2.1 | EnsemblPlantsGene:Solyc08g077060.2 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008219 | GO:GO:0009987 |
| GO:GO:0030154 | GO:GO:0031348 | GO:GO:0034051 | GO:GO:0045595 | InterPro:Multihaem_cyt_sf | InterPro:Znf_LSD1 |
| PFAM:PF06943 | SEG:seg | SUPFAM:SSF48695 | TIGRFAMs:TIGR01053 | UniParc:UPI000276C0C7 | UniProt:K4CN66 |
| MapMan:27.2.1 | : | : | : | : | : |
Description
Protein LOL1 [Source:Projected from Arabidopsis thaliana (AT1G32540) UniProtKB/Swiss-Prot;Acc:Q93ZB1]
Coordinates
chr8:-:60995888..61000163
Molecular Weight (calculated)
15148.5 Da
IEP (calculated)
7.740
GRAVY (calculated)
0.336
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVPLAPYPT PPTPFTPPSN GTQSQLVCSG CRNLLLYPVG ATSVCCAVCN AVTAVPPPGT EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLAMEANQV
101: AHVNCGNCHM LLMYQYGARS VKCAVCNFVT SVGVATSTAE QKFNS
101: AHVNCGNCHM LLMYQYGARS VKCAVCNFVT SVGVATSTAE QKFNS
001: MPVPLAPYPT PPAPALAPSY NTPPANGSTS GQSQLVCSGC RNLLMYPVGA TSVCCAVCNA VTAVPPPGTE MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV
101: NLALEANQVA HVNCGNCMML LMYQYGARSV KCAVCNFVTS VGGSTSTTDS KFNN
101: NLALEANQVA HVNCGNCMML LMYQYGARSV KCAVCNFVTS VGGSTSTTDS KFNN
Arabidopsis Description
LOL1lsd one like 1 [Source:TAIR;Acc:AT1G32540]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.