Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
- plastid 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra028662.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G32540.1 | Bra028662.1-P | AT5G08330.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g077060.2.1 | Tomato | plastid | 77.71 | 84.14 |
| TraesCS1A01G279500.3 | Wheat | plastid | 75.8 | 81.51 |
| TraesCS1D01G278800.2 | Wheat | plastid | 75.8 | 81.51 |
| TraesCS1B01G288600.3 | Wheat | plastid | 75.8 | 81.51 |
| KRH77212 | Soybean | plastid | 75.8 | 80.95 |
| KRH04330 | Soybean | plastid | 77.07 | 80.67 |
| EES14592 | Sorghum | plastid | 73.25 | 80.42 |
| GSMUA_Achr7P04710_001 | Banana | plastid | 71.97 | 80.14 |
| PGSC0003DMT400045143 | Potato | plastid | 76.43 | 78.95 |
| CDY26902 | Canola | endoplasmic reticulum, extracellular | 73.25 | 74.68 |
| GSMUA_AchrUn_... | Banana | plastid | 71.34 | 74.67 |
| KRH58208 | Soybean | plastid | 57.32 | 73.17 |
| Os08t0159500-01 | Rice | nucleus | 73.89 | 63.04 |
| VIT_02s0012g00990.t01 | Wine grape | cytosol, extracellular, plastid | 75.16 | 61.78 |
| AT1G32540.1 | Thale cress | extracellular | 70.06 | 58.82 |
| GSMUA_Achr3P27560_001 | Banana | extracellular | 75.16 | 57.0 |
| HORVU1Hr1G073170.3 | Barley | plastid | 76.43 | 42.4 |
| Bra013460.1-P | Field mustard | cytosol | 47.13 | 38.34 |
| Zm00001d049525_P004 | Maize | plastid | 48.41 | 37.81 |
| Bra038804.1-P | Field mustard | cytosol | 45.86 | 37.11 |
| Bra020924.1-P | Field mustard | cytosol | 27.39 | 34.13 |
| Bra020902.1-P | Field mustard | cytosol | 29.3 | 32.86 |
Protein Annotations
| EnsemblPlants:Bra010171.1 | EnsemblPlants:Bra010171.1-P | EnsemblPlantsGene:Bra010171 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008219 |
| GO:GO:0009987 | GO:GO:0030154 | GO:GO:0031348 | GO:GO:0034051 | GO:GO:0045595 | InterPro:Znf_LSD1 |
| PFAM:PF06943 | SEG:seg | TIGRFAMs:TIGR01053 | UniParc:UPI000253F7DD | UniProt:M4D122 | MapMan:27.2.1 |
Description
AT1G32540 (E=3e-053) LOL1 | LOL1 (LSD ONE LIKE 1); DNA binding
Coordinates
chrA06:+:20454396..20455792
Molecular Weight (calculated)
16254.0 Da
IEP (calculated)
8.323
GRAVY (calculated)
0.340
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVPLAPYPT PPATPLAPAY TPPSPANGST GGQSQLVCSG CRNLLMYPVG ATSVCCAVCN AVTAVPPPGT EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT
101: VNLALEANQV AHVNCGSCKM LLMYQYGARS VKCAVCSFIT SVGVNISYLH KKGKHGF
101: VNLALEANQV AHVNCGSCKM LLMYQYGARS VKCAVCSFIT SVGVNISYLH KKGKHGF
001: MPVPLAPYPT PPAPALAPSY NTPPANGSTS GQSQLVCSGC RNLLMYPVGA TSVCCAVCNA VTAVPPPGTE MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV
101: NLALEANQVA HVNCGNCMML LMYQYGARSV KCAVCNFVTS VGGSTSTTDS KFNN
101: NLALEANQVA HVNCGNCMML LMYQYGARSV KCAVCNFVTS VGGSTSTTDS KFNN
Arabidopsis Description
LOL1lsd one like 1 [Source:TAIR;Acc:AT1G32540]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.