Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 4
- golgi 3
- extracellular 5
- mitochondrion 1
- vacuole 2
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g077060.2.1 | Tomato | plastid | 62.57 | 80.69 |
| CDY26902 | Canola | endoplasmic reticulum, extracellular | 63.64 | 77.27 |
| GSMUA_Achr7P04710_001 | Banana | plastid | 57.75 | 76.6 |
| EES14592 | Sorghum | plastid | 58.29 | 76.22 |
| KRH77212 | Soybean | plastid | 58.82 | 74.83 |
| TraesCS1D01G278800.2 | Wheat | plastid | 58.29 | 74.66 |
| TraesCS1B01G288600.3 | Wheat | plastid | 58.29 | 74.66 |
| TraesCS1A01G279500.3 | Wheat | plastid | 58.29 | 74.66 |
| PGSC0003DMT400045143 | Potato | plastid | 59.89 | 73.68 |
| KRH04330 | Soybean | plastid | 58.29 | 72.67 |
| Bra010171.1-P | Field mustard | plastid | 58.82 | 70.06 |
| GSMUA_AchrUn_... | Banana | plastid | 55.08 | 68.67 |
| KRH58208 | Soybean | plastid | 41.71 | 63.41 |
| Os08t0159500-01 | Rice | nucleus | 59.89 | 60.87 |
| VIT_02s0012g00990.t01 | Wine grape | cytosol, extracellular, plastid | 60.43 | 59.16 |
| GSMUA_Achr3P27560_001 | Banana | extracellular | 58.29 | 52.66 |
| Zm00001d049525_P004 | Maize | plastid | 42.25 | 39.3 |
| HORVU1Hr1G073170.3 | Barley | plastid | 58.29 | 38.52 |
| AT4G20380.8 | Thale cress | extracellular | 38.5 | 34.29 |
| AT4G21610.1 | Thale cress | cytosol, nucleus, plastid | 27.27 | 32.9 |
Protein Annotations
| MapMan:27.2.1 | EntrezGene:840148 | ProteinID:AEE31499.1 | ArrayExpress:AT1G32540 | EnsemblPlantsGene:AT1G32540 | RefSeq:AT1G32540 |
| TAIR:AT1G32540 | RefSeq:AT1G32540-TAIR-G | EnsemblPlants:AT1G32540.1 | TAIR:AT1G32540.1 | Symbol:LOL1 | RefSeq:NP_849742.2 |
| PFAM:PF06943 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| TIGRFAMs:TIGR01053 | TMHMM:TMhelix | UniParc:UPI000034F436 | InterPro:Znf_LSD1 | SEG:seg | : |
Description
LOL1lsd one like 1 [Source:TAIR;Acc:AT1G32540]
Coordinates
chr1:+:11767485..11770049
Molecular Weight (calculated)
20287.0 Da
IEP (calculated)
8.288
GRAVY (calculated)
0.413
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MHTWKNQIFS DSQFVLLFMG KNCSIIFPEP HLFISHVFII HLNVLFLVKK INKNNLRFVG STSGQSQLVC SGCRNLLMYP VGATSVCCAV CNAVTAVPPP
101: GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLALEAN QVAHVNCGNC MMLLMYQYGA RSVKCAVCNF VTSVGGSTST TDSKFNN
101: GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLALEAN QVAHVNCGNC MMLLMYQYGA RSVKCAVCNF VTSVGGSTST TDSKFNN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.