CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
EES07800

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32540.1	EES07800	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G278800.2	Wheat	plastid	94.41	92.47
TraesCS1B01G288600.3	Wheat	plastid	94.41	92.47
TraesCS1A01G279500.3	Wheat	plastid	94.41	92.47
Solyc08g077060.2.1	Tomato	plastid	88.11	86.9
GSMUA_Achr7P04710_001	Banana	plastid	81.82	82.98
KRH77212	Soybean	plastid	82.52	80.27
PGSC0003DMT400045143	Potato	plastid	85.31	80.26
KRH04330	Soybean	plastid	82.52	78.67
GSMUA_AchrUn_...	Banana	plastid	81.12	77.33
Os08t0159500-01	Rice	nucleus	97.9	76.09
CDX73255	Canola	extracellular	48.25	75.0
Bra010171.1-P	Field mustard	plastid	80.42	73.25
KRH58208	Soybean	plastid	58.04	67.48
VIT_02s0012g00990.t01	Wine grape	cytosol, extracellular, plastid	84.62	63.35
GSMUA_Achr3P27560_001	Banana	extracellular	88.11	60.87
AT1G32540.1	Thale cress	extracellular	76.22	58.29
CDY01267	Canola	mitochondrion	26.57	52.05
HORVU1Hr1G073170.3	Barley	plastid	93.71	47.35
EER91186	Sorghum	extracellular, mitochondrion, peroxisome, plastid	51.75	42.29
Zm00001d049525_P004	Maize	plastid	54.55	38.81
OQU79832	Sorghum	mitochondrion	36.36	32.5
KXG23966	Sorghum	mitochondrion	53.85	29.5
KXG32887	Sorghum	nucleus	34.97	5.64

Protein Annotations

MapMan:27.2.1	EntrezGene:8069635	UniProt:C5YHD0	EnsemblPlants:EES14592	ProteinID:EES14592	ProteinID:EES14592.1
GO:GO:0006950	GO:GO:0008150	GO:GO:0008219	GO:GO:0009987	GO:GO:0030154	GO:GO:0031348
GO:GO:0034051	GO:GO:0045595	InterPro:Multihaem_cyt_sf	PFAM:PF06943	PANTHER:PTHR31747	PANTHER:PTHR31747:SF1
EnsemblPlantsGene:SORBI_3007G050100	SUPFAM:SSF48695	unigene:Sbi.6324	TIGRFAMs:TIGR01053	UniParc:UPI0001A87C52	RefSeq:XP_002445097.1
InterPro:Znf_LSD1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:5027644..5032892

Molecular Weight (calculated)

14805.2 Da

IEP (calculated)

7.918

GRAVY (calculated)

0.339

Length

143 amino acids

Sequence
(BLAST)

001: MPVPLAPYPT PPVPFTPPNG AQSQLVCTGC RNLLMYPAGA TSVCCAVCST VTAVPAPGTE MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLAMEANQVA
101: HVNCGNCRML LMYQYGARSV KCAVCNFVTS VGASPGAEQK PSS

Best Arabidopsis Sequence Match ( AT1G32540.1 )
(BLAST)

001: MHTWKNQIFS DSQFVLLFMG KNCSIIFPEP HLFISHVFII HLNVLFLVKK INKNNLRFVG STSGQSQLVC SGCRNLLMYP VGATSVCCAV CNAVTAVPPP
101: GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLALEAN QVAHVNCGNC MMLLMYQYGA RSVKCAVCNF VTSVGGSTST TDSKFNN

Arabidopsis Description

LOL1lsd one like 1 [Source:TAIR;Acc:AT1G32540]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.