CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, extracellular

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 3
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion, peroxisome, plastid
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033262_P001	Maize	extracellular	85.14	78.42
Os03t0639600-01	Rice	mitochondrion, plastid	82.86	77.96
TraesCS5D01G386200.2	Wheat	mitochondrion	80.0	77.35
TraesCS5B01G379800.1	Wheat	mitochondrion	79.43	77.22
TraesCS5A01G376200.1	Wheat	mitochondrion	79.43	77.22
GSMUA_Achr7P00950_001	Banana	mitochondrion	65.71	64.25
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	56.57	61.11
KRH43079	Soybean	extracellular	61.14	60.45
HORVU5Hr1G093280.4	Barley	mitochondrion	79.43	60.43
PGSC0003DMT400054616	Potato	extracellular	60.0	60.34
KRH59208	Soybean	extracellular	60.57	59.89
KRH37706	Soybean	mitochondrion	54.86	55.17
Bra020924.1-P	Field mustard	cytosol	39.43	54.76
CDX98669	Canola	cytosol	57.71	52.88
CDX76459	Canola	cytosol	54.29	52.78
CDX94003	Canola	mitochondrion	57.71	52.33
Bra038804.1-P	Field mustard	cytosol	57.71	52.06
EES14592	Sorghum	plastid	42.29	51.75
CDX78991	Canola	cytosol	55.43	50.79
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	55.43	50.0
Bra013460.1-P	Field mustard	cytosol	54.86	49.74
KXG23966	Sorghum	mitochondrion	73.14	49.04
AT4G20380.8	Thale cress	extracellular	57.14	47.62
KRH12749	Soybean	extracellular	54.29	47.03
OQU79832	Sorghum	mitochondrion	42.86	46.88
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	44.57	46.71
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	60.57	40.93
CDY49490	Canola	plastid	53.14	38.59
KXG32887	Sorghum	nucleus	25.14	4.97

Protein Annotations

EnsemblPlants:EER91186	EnsemblPlantsGene:SORBI_3001G158500	EntrezGene:8057253	InterPro:Znf_LSD1	PANTHER:PTHR31747	PANTHER:PTHR31747:SF13
PFAM:PF06943	ProteinID:EER91186	ProteinID:EER91186.1	RefSeq:XP_002464188.1	SEG:seg	TIGRFAMs:TIGR01053
unigene:Sbi.1819	UniParc:UPI0001A82124	UniProt:C5WR97	MapMan:27.2.1	:	:

Description

hypothetical protein

Coordinates

chr1:+:12849913..12853876

Molecular Weight (calculated)

18337.3 Da

IEP (calculated)

8.434

GRAVY (calculated)

0.186

Length

175 amino acids

Sequence
(BLAST)

001: MQSQIVCHAC RTVLLYPRGA SSVCCAVCQA ITTVPPPGLE MAQLICGGCR TLLMYTRSAD TVRCSCCNTV NLVRPVNNIA HVNCGQCRTT LMYPYGAPSV
101: KCAICNYVTT TGVNTVAPTP SARPTSNESS YIGSSTSAPK SQPQNVTVVV ENPMTVDDKG KLVSSVVVGV TAGKV

Best Arabidopsis Sequence Match ( AT4G20380.7 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.