CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G059500.1	Wheat	mitochondrion	56.32	82.12
TraesCS5B01G054000.1	Wheat	mitochondrion	56.32	82.12
Os12t0611000-01	Rice	plastid	52.11	79.07
TraesCS5A01G048900.1	Wheat	cytosol, mitochondrion	56.32	74.62
EER91186	Sorghum	extracellular, mitochondrion, peroxisome, plastid	49.04	73.14
KRH43079	Soybean	extracellular	43.68	64.41
KRH59208	Soybean	extracellular	43.3	63.84
GSMUA_Achr7P00950_001	Banana	mitochondrion	41.76	60.89
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	36.78	59.26
PGSC0003DMT400054616	Potato	extracellular	39.46	59.2
KRH37706	Soybean	mitochondrion	38.31	57.47
Bra020924.1-P	Field mustard	cytosol	26.82	55.56
CDX98669	Canola	cytosol	39.85	54.45
KRH12749	Soybean	extracellular	41.76	53.96
CDX78991	Canola	cytosol	39.46	53.93
CDX76459	Canola	cytosol	37.16	53.89
EES14592	Sorghum	plastid	29.5	53.85
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	39.46	53.09
Bra038804.1-P	Field mustard	cytosol	39.46	53.09
Bra013460.1-P	Field mustard	cytosol	39.08	52.85
CDX94003	Canola	mitochondrion	39.08	52.85
Zm00001d041474_P001	Maize	mitochondrion	60.54	51.13
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	31.42	49.1
AT4G20380.8	Thale cress	extracellular	38.7	48.1
OQU79832	Sorghum	mitochondrion	29.12	47.5
CDY49490	Canola	plastid	38.31	41.49
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	40.23	40.54
KXG32887	Sorghum	nucleus	18.77	5.53

Protein Annotations

EnsemblPlants:KXG23966	EnsemblPlantsGene:SORBI_3008G165000	InterPro:Znf_LSD1	PANTHER:PTHR31747	PANTHER:PTHR31747:SF13	PFAM:PF06943
ProteinID:KXG23966	ProteinID:KXG23966.1	SEG:seg	TIGRFAMs:TIGR01053	UniParc:UPI00081ADD11	UniProt:A0A1B6PE69
MapMan:27.2.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:59832341..59836111

Molecular Weight (calculated)

27627.9 Da

IEP (calculated)

8.908

GRAVY (calculated)

0.209

Length

261 amino acids

Sequence
(BLAST)

001: MFRCLAGGMG RVRRSVAGSI NRAGEHGRSV WGNRMACAGF GIGRSWRGLF FSPDGAKLIE TLIVDVCWCK KNRIELGVGL GWDSMQSQIV CHGCRTVLLY
101: PRGAPSVCCA VCHAVTNVPP PAIEMARLIC GGCQTLLMYT RSATTVRCSC CDTVNLVRPV SSIAHVNCGQ CQTVLMYPYG APSVKCAICN FITNVGGVTP
201: VRPLPPALPA SSGNSYSIPS TSVPMNQSQN VTVVVENPMT VDDKGKLVSN VVVGVTSGGK K

Best Arabidopsis Sequence Match ( AT4G20380.7 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.