Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P24410_001 | Banana | mitochondrion | 5.76 | 56.04 |
| Zm00001d044463_P001 | Maize | nucleus | 55.42 | 55.36 |
| KRH50040 | Soybean | cytosol | 6.32 | 43.75 |
| Bra020902.1-P | Field mustard | cytosol | 6.32 | 40.0 |
| VIT_00s0181g00230.t01 | Wine grape | cytosol | 6.21 | 39.01 |
| EES14592 | Sorghum | plastid | 5.64 | 34.97 |
| AT4G21610.1 | Thale cress | cytosol, nucleus, plastid | 5.87 | 33.55 |
| CDX76435 | Canola | cytosol | 5.64 | 32.47 |
| EER91186 | Sorghum | extracellular, mitochondrion, peroxisome, plastid | 4.97 | 25.14 |
| Os01t0612700-01 | Rice | nucleus | 23.36 | 23.58 |
| CDY31418 | Canola | plastid | 6.21 | 22.54 |
| Solyc02g078270.2.1 | Tomato | nucleus | 8.01 | 18.78 |
| KXG23966 | Sorghum | mitochondrion | 5.53 | 18.77 |
| OQU79832 | Sorghum | mitochondrion | 3.39 | 18.75 |
| PGSC0003DMT400076422 | Potato | nucleus | 8.13 | 18.41 |
| TraesCS3D01G233000.2 | Wheat | nucleus | 15.46 | 15.17 |
| TraesCS3B01G250000.3 | Wheat | nucleus | 13.66 | 13.86 |
| TraesCS3A01G219500.1 | Wheat | nucleus | 9.48 | 12.94 |
Protein Annotations
| EnsemblPlants:KXG32887 | EnsemblPlantsGene:SORBI_3003G218700 | InterPro:Znf_LSD1 | PANTHER:PTHR31747 | PANTHER:PTHR31747:SF4 | PFAM:PF06943 |
| ProteinID:KXG32887 | ProteinID:KXG32887.1 | SEG:seg | TIGRFAMs:TIGR01053 | UniParc:UPI00081AE366 | UniProt:A0A1B6Q4N4 |
| MapMan:27.2.1 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:+:55412629..55423717
Molecular Weight (calculated)
92280.6 Da
IEP (calculated)
4.158
GRAVY (calculated)
-0.309
Length
886 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASPGTAEP LESSTTEHPG AVQLPPLPID EAEPSPPLLG AAAAHEAISP RKSASPSPLP ANMAVEVSPE VEASSSSPSP SPSPSQSPQI VEASPGAPKP
101: LSPPRTAPAA AERASTDLSI TEAVAMASQE GARPSPSPES MDAHLHTASA PLTPPMEIGP GGLLPQQQPQ PPSPEMAPPL CDYSEPAQPS PLCHPDECTG
201: ASPDAPVDEV VAGTSGKAAR PSPCENSEFA QLPQPHLPAE STYVCSNAAG KVSAVASEDG TQPAMESIDS EGPLEIGVQR SLQEPEETTT PSRMEAEPCS
301: PEMAPPGFED CKSQWLPLSD PNPLVESTHT VVQVTATNAM DTTPDTATGS LSPGLLPLLK RGAEGQHPRS CSPTTEAEPG SPDMPPPGFE NCKSSWLPLP
401: TLQPVAETTY VSHDVAPTKT MAVGFMEKAC SVVALERTDV EIDSERSLLP PLESGTGSSL QGPLPRLPSP MMRAIPCSPD TAPPGFENLK FTQLPPPSLP
501: LVQTAHVLQN SADNEAMSVI SEEAPQPSPA VDAMDLDINA KPVLALPSES KPGKSLPPEP TLLLSHVAQH TTCSLGMVLL GSENIKSSQM LLPALVLPLD
601: QTPDILADAG TKKTVTIEGV CHPPPVAGAT EEANGSVLPP ATENGCEGQS PQLEPQASSP AVDAAATSLE IAPRSFENSE SSQLISPCLA ETIDPSTHAS
701: ATMPVLVKSE KTSLPLSPLQ ATGTDMESTI LQQSPSKSEE RSLAEPEQHL SSPSVKGTTC SPEVAPPGYE NFDSLDQPPP PPPLCSKFEI GQMVCGCCRQ
801: LVAYPRGAVH VQCFGCSTIN LVLEEHQVGK MYCGQCDTLL MYPFGAPAVK CSNCLFVTEI GERNVRPRIL MEQSVSPDPQ EVVHQS
101: LSPPRTAPAA AERASTDLSI TEAVAMASQE GARPSPSPES MDAHLHTASA PLTPPMEIGP GGLLPQQQPQ PPSPEMAPPL CDYSEPAQPS PLCHPDECTG
201: ASPDAPVDEV VAGTSGKAAR PSPCENSEFA QLPQPHLPAE STYVCSNAAG KVSAVASEDG TQPAMESIDS EGPLEIGVQR SLQEPEETTT PSRMEAEPCS
301: PEMAPPGFED CKSQWLPLSD PNPLVESTHT VVQVTATNAM DTTPDTATGS LSPGLLPLLK RGAEGQHPRS CSPTTEAEPG SPDMPPPGFE NCKSSWLPLP
401: TLQPVAETTY VSHDVAPTKT MAVGFMEKAC SVVALERTDV EIDSERSLLP PLESGTGSSL QGPLPRLPSP MMRAIPCSPD TAPPGFENLK FTQLPPPSLP
501: LVQTAHVLQN SADNEAMSVI SEEAPQPSPA VDAMDLDINA KPVLALPSES KPGKSLPPEP TLLLSHVAQH TTCSLGMVLL GSENIKSSQM LLPALVLPLD
601: QTPDILADAG TKKTVTIEGV CHPPPVAGAT EEANGSVLPP ATENGCEGQS PQLEPQASSP AVDAAATSLE IAPRSFENSE SSQLISPCLA ETIDPSTHAS
701: ATMPVLVKSE KTSLPLSPLQ ATGTDMESTI LQQSPSKSEE RSLAEPEQHL SSPSVKGTTC SPEVAPPGYE NFDSLDQPPP PPPLCSKFEI GQMVCGCCRQ
801: LVAYPRGAVH VQCFGCSTIN LVLEEHQVGK MYCGQCDTLL MYPFGAPAVK CSNCLFVTEI GERNVRPRIL MEQSVSPDPQ EVVHQS
001: MEEIQQQTQK EEQKHREEEE EEEEGPPPGW ESAVLPPPIV TITAAVNPNP TTVEIPEKAQ MVCGSCRRLL SYLRGSKHVK CSSCQTVNLV LEANQVGQVN
101: CNNCKLLLMY PYGAPAVRCS SCNSVTDISE NNKRPPWSEQ QGPLKSLSSL RRAEN
101: CNNCKLLLMY PYGAPAVRCS SCNSVTDISE NNKRPPWSEQ QGPLKSLSSL RRAEN
Arabidopsis Description
LOL2Protein LOL2 [Source:UniProtKB/Swiss-Prot;Acc:O65426]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.