Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G233000.2 | Wheat | nucleus | 88.32 | 85.38 |
| TraesCS3A01G219500.1 | Wheat | nucleus | 41.35 | 55.62 |
| Os01t0612700-01 | Rice | nucleus | 21.19 | 21.07 |
| KXG32887 | Sorghum | nucleus | 13.86 | 13.66 |
| TraesCS1B01G288600.3 | Wheat | plastid | 2.18 | 13.01 |
| KRH50040 | Soybean | cytosol | 1.83 | 12.5 |
| Zm00001d044463_P001 | Maize | nucleus | 11.8 | 11.61 |
| Bra020902.1-P | Field mustard | cytosol | 1.6 | 10.0 |
| VIT_00s0181g00230.t01 | Wine grape | cytosol | 1.6 | 9.93 |
| Solyc02g078270.2.1 | Tomato | nucleus | 4.24 | 9.79 |
| TraesCS5B01G054000.1 | Wheat | mitochondrion | 1.95 | 9.5 |
| PGSC0003DMT400076422 | Potato | nucleus | 4.12 | 9.21 |
| CDX76435 | Canola | cytosol | 1.49 | 8.44 |
| TraesCS5B01G379800.1 | Wheat | mitochondrion | 1.72 | 8.33 |
| GSMUA_Achr7P24410_001 | Banana | mitochondrion | 0.8 | 7.69 |
| AT4G21610.1 | Thale cress | cytosol, nucleus, plastid | 1.26 | 7.1 |
| CDY31418 | Canola | plastid | 1.95 | 6.97 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G250000.3 | EnsemblPlantsGene:TraesCS3B01G250000 | InterPro:Znf_LSD1 | PANTHER:PTHR31747 | PANTHER:PTHR31747:SF4 | PFAM:PF06943 |
| SEG:seg | TIGRFAMs:TIGR01053 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr3B:-:398841938..398852747
Molecular Weight (calculated)
91206.3 Da
IEP (calculated)
4.153
GRAVY (calculated)
-0.272
Length
873 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSSPEIGPP SENKPMISPP PFPSAPPPQE TPQPTTADPL EPAQSDHAES TPPSHPGLTA TSPEACESTV SAPAHIDGKK REAGRPPSLS ASPALEATKL
101: EQHASPLPPP AAEAFPEAAT TEASPSPSHQ IVAASVAETP SPSTPSSPPA WTAGALSDGS LADSAAVVSE EAGRLPAALE SMDANRPTAP APPTLPVKSE
201: PEGLLPQQHR RPPWPTVLPG CENFEHSQPP SPRPRQVEAA HGLPDAAQTN AIAVTSEEPG APSVCKSDSE GSFEVAMHIP LSSPTEAEPC SPDMAPPGFE
301: KFKFLWPPLP PPNLSVETAH SLLNSAVPEG VANPLPVLET MDTKVVAARN LPLPSSESGA EEPLWQPLLR SPSPITQAEP CSPDMPPPGF ENFKLSCMPL
401: SNENTYASSD VIATKAVAVT PEEAVLSVPT LEAIDVETDS ACNLLPPLGS KLEGLLKQPL LRSTTPVAES PPCSPEIAPP GFESFRLSWQ PLSTPPSGTA
501: YIMPDAAVMP LPVTLEEAAG SPPALEAMDV DMNAIHPLTV PLESGVEGSL QEPQPRPPSP ISQDVPSSPD MAPPGFENFK SSQLLLPSPV FSQTAFTLHD
601: STTTIAEYVS EEAAQLSPAL ETIDVKMETS PESGAEGSLP QQMHWRPSPK ENGTACSPEM VPSGHENLQP LPYPAFLPQA QTPDVVATGA VIGALDQMHH
701: PAPVLGTIEE GTSPILSPPL ESGSLPQLEP QMNSVTAHVV DTPMHVPATD CVAVNSEGPV LPPPALQAMV TNMDSATTLL PRFENGAEGS LPQLRQQSSS
801: PNVQAAPCSL DAVELLPPPP PPFINKEVGQ MVCGSCRELI AYPRGAVHVQ CAACRTINLV VEAHEVGNVH WTM
101: EQHASPLPPP AAEAFPEAAT TEASPSPSHQ IVAASVAETP SPSTPSSPPA WTAGALSDGS LADSAAVVSE EAGRLPAALE SMDANRPTAP APPTLPVKSE
201: PEGLLPQQHR RPPWPTVLPG CENFEHSQPP SPRPRQVEAA HGLPDAAQTN AIAVTSEEPG APSVCKSDSE GSFEVAMHIP LSSPTEAEPC SPDMAPPGFE
301: KFKFLWPPLP PPNLSVETAH SLLNSAVPEG VANPLPVLET MDTKVVAARN LPLPSSESGA EEPLWQPLLR SPSPITQAEP CSPDMPPPGF ENFKLSCMPL
401: SNENTYASSD VIATKAVAVT PEEAVLSVPT LEAIDVETDS ACNLLPPLGS KLEGLLKQPL LRSTTPVAES PPCSPEIAPP GFESFRLSWQ PLSTPPSGTA
501: YIMPDAAVMP LPVTLEEAAG SPPALEAMDV DMNAIHPLTV PLESGVEGSL QEPQPRPPSP ISQDVPSSPD MAPPGFENFK SSQLLLPSPV FSQTAFTLHD
601: STTTIAEYVS EEAAQLSPAL ETIDVKMETS PESGAEGSLP QQMHWRPSPK ENGTACSPEM VPSGHENLQP LPYPAFLPQA QTPDVVATGA VIGALDQMHH
701: PAPVLGTIEE GTSPILSPPL ESGSLPQLEP QMNSVTAHVV DTPMHVPATD CVAVNSEGPV LPPPALQAMV TNMDSATTLL PRFENGAEGS LPQLRQQSSS
801: PNVQAAPCSL DAVELLPPPP PPFINKEVGQ MVCGSCRELI AYPRGAVHVQ CAACRTINLV VEAHEVGNVH WTM
001: MEEIQQQTQK EEQKHREEEE EEEEGPPPGW ESAVLPPPIV TITAAVNPNP TTVEIPEKAQ MVCGSCRRLL SYLRGSKHVK CSSCQTVNLV LEANQVGQVN
101: CNNCKLLLMY PYGAPAVRCS SCNSVTDISE NNKRPPWSEQ QGPLKSLSSL RRAEN
101: CNNCKLLLMY PYGAPAVRCS SCNSVTDISE NNKRPPWSEQ QGPLKSLSSL RRAEN
Arabidopsis Description
LOL2Protein LOL2 [Source:UniProtKB/Swiss-Prot;Acc:O65426]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.