Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g078270.2.1 | Tomato | nucleus | 69.82 | 72.22 |
| GSMUA_Achr7P24410_001 | Banana | mitochondrion | 16.62 | 71.43 |
| KRH50040 | Soybean | cytosol | 18.67 | 57.03 |
| VIT_00s0181g00230.t01 | Wine grape | cytosol | 18.67 | 51.77 |
| Bra020902.1-P | Field mustard | cytosol | 18.41 | 51.43 |
| AT4G21610.1 | Thale cress | cytosol, nucleus, plastid | 19.18 | 48.39 |
| CDX76435 | Canola | cytosol | 18.67 | 47.4 |
| PGSC0003DMT400045143 | Potato | plastid | 12.79 | 32.89 |
| CDY31418 | Canola | plastid | 18.41 | 29.51 |
| PGSC0003DMT400054616 | Potato | extracellular | 12.79 | 28.74 |
| Os01t0612700-01 | Rice | nucleus | 21.99 | 9.79 |
| KXG32887 | Sorghum | nucleus | 18.41 | 8.13 |
| Zm00001d044463_P001 | Maize | nucleus | 17.65 | 7.78 |
| TraesCS3A01G219500.1 | Wheat | nucleus | 7.67 | 4.62 |
| TraesCS3D01G233000.2 | Wheat | nucleus | 10.49 | 4.54 |
| TraesCS3B01G250000.3 | Wheat | nucleus | 9.21 | 4.12 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400076422 | EnsemblPlantsGene:PGSC0003DMG400029720 | EntrezGene:102593239 | InterPro:Znf_LSD1 | PANTHER:PTHR31747 | PANTHER:PTHR31747:SF4 |
| PFAM:PF06943 | PGSC:PGSC0003DMG400029720 | RefSeq:XP_006347044.1 | SEG:seg | TIGRFAMs:TIGR01053 | UniParc:UPI000296CE6B |
| UniProt:M1CWQ8 | MapMan:27.2.1 | : | : | : | : |
Description
Zinc finger protein LSD2 [Source:PGSC_GENE;Acc:PGSC0003DMG400029720]
Coordinates
chr2:+:34022687..34029700
Molecular Weight (calculated)
42581.9 Da
IEP (calculated)
4.404
GRAVY (calculated)
-0.787
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEKLSNIEN QQVDDEEEDE GPPPGFDSLA VPSQNTNVVI DEDDDEGPPP GWSSIPQQHN LQTTDVEMGG KEHKSEDDED GPPPGWNTVI PQKKLPSLPP
101: TIEAVTCDID MEKKEEIIKN EDNGPPPRWQ LTPKLLPLQT STPPSGTQGA SLEDIEMEKK EEAVEDEDNG PPPGWQLTPQ LLPLQTSTSP SGIQGVPLAA
201: FVDVEMASNQ DCDVEKEGHP LGLESVPMNG HSSPPTPPPQ SSSSVASSEM EMGRKQEGTK NEEERPQIEK QPMSHLLQMK PIVPQASSHA ATVSSEMGQM
301: VCGGCRQLLS YPQGAKLVKC SCCQTVNLVL EAHEVGQVKC GGCAVLLMYP YGAPSVRCSS CRHMTKIGAH NRRPPQSVQQ PRRRHPSYQV H
101: TIEAVTCDID MEKKEEIIKN EDNGPPPRWQ LTPKLLPLQT STPPSGTQGA SLEDIEMEKK EEAVEDEDNG PPPGWQLTPQ LLPLQTSTSP SGIQGVPLAA
201: FVDVEMASNQ DCDVEKEGHP LGLESVPMNG HSSPPTPPPQ SSSSVASSEM EMGRKQEGTK NEEERPQIEK QPMSHLLQMK PIVPQASSHA ATVSSEMGQM
301: VCGGCRQLLS YPQGAKLVKC SCCQTVNLVL EAHEVGQVKC GGCAVLLMYP YGAPSVRCSS CRHMTKIGAH NRRPPQSVQQ PRRRHPSYQV H
001: MEEIQQQTQK EEQKHREEEE EEEEGPPPGW ESAVLPPPIV TITAAVNPNP TTVEIPEKAQ MVCGSCRRLL SYLRGSKHVK CSSCQTVNLV LEANQVGQVN
101: CNNCKLLLMY PYGAPAVRCS SCNSVTDISE NNKRPPWSEQ QGPLKSLSSL RRAEN
101: CNNCKLLLMY PYGAPAVRCS SCNSVTDISE NNKRPPWSEQ QGPLKSLSSL RRAEN
Arabidopsis Description
LOL2Protein LOL2 [Source:UniProtKB/Swiss-Prot;Acc:O65426]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.