Factsheet for PGSC0003DMT400054616

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 4
golgi 2
plasma membrane 3
endoplasmic reticulum 2
vacuole 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	87.93	94.44
KRH43079	Soybean	extracellular	70.11	68.93
KRH59208	Soybean	extracellular	70.11	68.93
KRH37706	Soybean	mitochondrion	62.64	62.64
CDX94003	Canola	mitochondrion	67.82	61.14
CDX76459	Canola	cytosol	63.22	61.11
Bra020924.1-P	Field mustard	cytosol	43.68	60.32
CDX98669	Canola	cytosol	66.09	60.21
EER91186	Sorghum	extracellular, mitochondrion, peroxisome, plastid	60.34	60.0
Bra038804.1-P	Field mustard	cytosol	65.52	58.76
Os12t0611000-01	Rice	plastid	58.05	58.72
GSMUA_Achr7P00950_001	Banana	mitochondrion	60.34	58.66
CDX78991	Canola	cytosol	64.37	58.64
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	64.37	57.73
TraesCS5B01G054000.1	Wheat	mitochondrion	59.2	57.54
Os03t0639600-01	Rice	mitochondrion, plastid	61.49	57.53
Bra013460.1-P	Field mustard	cytosol	63.79	57.51
Zm00001d033262_P001	Maize	extracellular	62.64	57.37
TraesCS5D01G059500.1	Wheat	mitochondrion	58.62	56.98
TraesCS5B01G379800.1	Wheat	mitochondrion	58.05	56.11
TraesCS5A01G376200.1	Wheat	mitochondrion	58.05	56.11
TraesCS5D01G386200.2	Wheat	mitochondrion	58.05	55.8
AT4G20380.8	Thale cress	extracellular	65.52	54.29
KRH12749	Soybean	extracellular	62.64	53.96
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	51.72	53.89
GSMUA_Achr7P08020_001	Banana	mitochondrion	55.17	53.63
PGSC0003DMT400045143	Potato	plastid	45.98	52.63
TraesCS5A01G048900.1	Wheat	cytosol, mitochondrion	59.2	52.28
Os08t0130100-01	Rice	cytosol	42.53	50.34
GSMUA_Achr6P31340_001	Banana	cytosol	35.06	49.59
Zm00001d035195_P001	Maize	mitochondrion	39.66	46.0
OQU79832	Sorghum	mitochondrion	41.38	45.0
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	66.67	44.79
CDY49490	Canola	plastid	61.49	44.4
TraesCS7A01G310500.1	Wheat	cytosol	33.33	43.94
HORVU7Hr1G074030.2	Barley	cytosol	33.33	43.94
HORVU5Hr1G093280.4	Barley	mitochondrion	57.47	43.48
TraesCS7D01G307000.1	Wheat	cytosol	32.76	43.18
Zm00001d049625_P001	Maize	plastid	27.59	40.68
KXG23966	Sorghum	mitochondrion	59.2	39.46
Zm00001d041474_P001	Maize	mitochondrion	57.47	32.36
PGSC0003DMT400076422	Potato	nucleus	28.74	12.79

Protein Annotations

EntrezGene:102606105	MapMan:27.2.1	ProteinID:AEB22065	ProteinID:AEB22065.1	GO:GO:0000303	GO:GO:0001666
GO:GO:0002240	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0008219	GO:GO:0009605	GO:GO:0009607	GO:GO:0009626	GO:GO:0009628	GO:GO:0009653
GO:GO:0009719	GO:GO:0009862	GO:GO:0009987	GO:GO:0010104	GO:GO:0010310	GO:GO:0010602
GO:GO:0010618	EMBL:JF773561	EMBL:KT036491	UniProt:M1BWM1	PFAM:PF06943	EnsemblPlantsGene:PGSC0003DMG400021196
PGSC:PGSC0003DMG400021196	EnsemblPlants:PGSC0003DMT400054616	PANTHER:PTHR31747	PANTHER:PTHR31747:SF3	TIGRFAMs:TIGR01053	UniParc:UPI000296C67C
RefSeq:XP_006353029.1	RefSeq:XP_006353030.1	RefSeq:XP_015166652.1	InterPro:Znf_LSD1	SEG:seg	:

Description

Charged multivesicular body protein 2b-B [Source:PGSC_GENE;Acc:PGSC0003DMG400021196]

Coordinates

chr2:+:28825195..28831426

Molecular Weight (calculated)

18109.1 Da

IEP (calculated)

8.394

GRAVY (calculated)

0.083

Length

174 amino acids

Sequence
(BLAST)

001: MQSQLMCSGC RTMLLYPRGA SNVCCAVCNA LTPVPPPGME MAQLICGGCR TLLMHPRGAN SVRCSCCHTV NLVPGPNQFA HVYCGNCRMM LMYPCGAPSV
101: KCAVCHYITN VNAGDGRAHA SLNPPNGTAT PASGSSSTAK ARSQNQTVVV QNPMSVDESG KLVSNVVVGV TTTS

Best Arabidopsis Sequence Match ( AT4G20380.7 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.