CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013460.1-P	Field mustard	cytosol	97.91	96.89
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	97.38	95.88
CDX94003	Canola	mitochondrion	87.96	87.05
CDX98669	Canola	cytosol	86.91	86.91
CDX76459	Canola	cytosol	76.44	81.11
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	63.35	72.46
KRH43079	Soybean	extracellular	66.49	71.75
AT4G20380.8	Thale cress	extracellular	78.53	71.43
KRH59208	Soybean	extracellular	65.97	71.19
KRH37706	Soybean	mitochondrion	63.35	69.54
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	54.97	64.81
PGSC0003DMT400054616	Potato	extracellular	58.64	64.37
Os12t0611000-01	Rice	plastid	57.07	63.37
KRH12749	Soybean	extracellular	63.87	60.4
TraesCS5D01G059500.1	Wheat	mitochondrion	56.02	59.78
TraesCS5B01G054000.1	Wheat	mitochondrion	56.02	59.78
GSMUA_Achr7P00950_001	Banana	mitochondrion	53.93	57.54
GSMUA_Achr7P08020_001	Banana	mitochondrion	52.36	55.87
CDX73255	Canola	extracellular	26.7	55.43
EER91186	Sorghum	extracellular, mitochondrion, peroxisome, plastid	50.79	55.43
Os03t0639600-01	Rice	mitochondrion, plastid	53.93	55.38
GSMUA_Achr6P31340_001	Banana	cytosol	35.08	54.47
TraesCS5A01G376200.1	Wheat	mitochondrion	51.31	54.44
TraesCS5A01G048900.1	Wheat	cytosol, mitochondrion	56.02	54.31
Zm00001d033262_P001	Maize	extracellular	53.93	54.21
TraesCS5D01G386200.2	Wheat	mitochondrion	51.31	54.14
TraesCS5B01G379800.1	Wheat	mitochondrion	50.79	53.89
CDY49490	Canola	plastid	65.44	51.87
Os08t0130100-01	Rice	cytosol	38.22	49.66
CDY26902	Canola	endoplasmic reticulum, extracellular	38.74	48.05
Zm00001d035195_P001	Maize	mitochondrion	36.13	46.0
TraesCS7A01G310500.1	Wheat	cytosol	31.41	45.45
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	60.21	44.4
Zm00001d049625_P001	Maize	plastid	27.23	44.07
HORVU7Hr1G074030.2	Barley	cytosol	30.37	43.94
CDY01267	Canola	mitochondrion	16.75	43.84
OQU79832	Sorghum	mitochondrion	36.65	43.75
TraesCS7D01G307000.1	Wheat	cytosol	29.84	43.18
HORVU5Hr1G093280.4	Barley	mitochondrion	51.31	42.61
KXG23966	Sorghum	mitochondrion	53.93	39.46
CDY68066	Canola	plastid	25.65	34.75
Zm00001d041474_P001	Maize	mitochondrion	53.93	33.33
CDX76435	Canola	cytosol	24.61	30.52
CDY31418	Canola	plastid	24.61	19.26

Protein Annotations

EnsemblPlants:CDX78991	EnsemblPlantsGene:GSBRNA2T00131511001	InterPro:Znf_LSD1	PANTHER:PTHR31747	PANTHER:PTHR31747:SF3	PFAM:PF06943
ProteinID:CDX78991	ProteinID:CDX78991.1	SEG:seg	TIGRFAMs:TIGR01053	UniParc:UPI0001DE411A	MapMan:27.2.1

Description

BnaA01g10580D

Coordinates

chrLK031816:+:1243685..1245532

Molecular Weight (calculated)

20213.5 Da

IEP (calculated)

8.622

GRAVY (calculated)

-0.131

Length

191 amino acids

Sequence
(BLAST)

001: MQDQLVCHGC RNTLMYPRGA TNVRCALCHI VNMVPLHPHP PPPHHAHAGM DMAHIVCGGC RTMLMYTRGA SSVRCSCCQT VNLVPGPPPS NQVAHINCGN
101: CRTTLMYPYG ASSVKCAVCQ FVTNVNMSNG RVPLASNRPN GTASPGTMPS TSTQSTPPSQ TQTVVVENPM SVNESGKLVS NVVVGVTTGQ K

Best Arabidopsis Sequence Match ( AT4G20380.7 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.