CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035195_P001	Maize	mitochondrion	78.12	83.33
Zm00001d049625_P001	Maize	plastid	61.25	83.05
Os08t0130100-01	Rice	cytosol	63.75	69.39
HORVU7Hr1G074030.2	Barley	cytosol	50.0	60.61
TraesCS7D01G307000.1	Wheat	cytosol	50.0	60.61
TraesCS7A01G310500.1	Wheat	cytosol	50.0	60.61
KRH59208	Soybean	extracellular	50.0	45.2
KRH43079	Soybean	extracellular	50.0	45.2
Bra020924.1-P	Field mustard	cytosol	33.75	42.86
EER91186	Sorghum	extracellular, mitochondrion, peroxisome, plastid	46.88	42.86
KRH37706	Soybean	mitochondrion	46.25	42.53
CDX76459	Canola	cytosol	46.88	41.67
PGSC0003DMT400054616	Potato	extracellular	45.0	41.38
GSMUA_Achr7P08020_001	Banana	mitochondrion	45.62	40.78
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	41.25	40.74
CDX98669	Canola	cytosol	46.25	38.74
GSMUA_Achr6P31340_001	Banana	cytosol	29.38	38.21
Bra038804.1-P	Field mustard	cytosol	46.25	38.14
CDX94003	Canola	mitochondrion	45.62	37.82
KRH12749	Soybean	extracellular	46.88	37.13
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	38.75	37.13
CDX78991	Canola	cytosol	43.75	36.65
EES14592	Sorghum	plastid	32.5	36.36
Bra013460.1-P	Field mustard	cytosol	43.75	36.27
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	43.75	36.08
AT4G20380.8	Thale cress	extracellular	45.0	34.29
CDY49490	Canola	plastid	46.88	31.12
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	47.5	29.34
KXG23966	Sorghum	mitochondrion	47.5	29.12
KXG32887	Sorghum	nucleus	18.75	3.39

Protein Annotations

EnsemblPlants:OQU79832	EnsemblPlantsGene:SORBI_3007G028700	EntrezGene:8074072	InterPro:Znf_LSD1	PANTHER:PTHR31747	PANTHER:PTHR31747:SF5
PFAM:PF06943	ProteinID:OQU79832	ProteinID:OQU79832.1	TIGRFAMs:TIGR01053	UniParc:UPI000B42623D	UniProt:A0A1Z5R7R9
MapMan:27.2.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:2568262..2569677

Molecular Weight (calculated)

16961.4 Da

IEP (calculated)

9.204

GRAVY (calculated)

-0.344

Length

160 amino acids

Sequence
(BLAST)

001: MHSQLVCGGC KRLLQYRRGA TGVCCPTCNT FTAANPSGPE MSELVCGGCF TMLVHSRSAT NIRCPHCSRL NSTRSAGNQM GHLSCGQCRT TLAYPPGATT
101: VGCPTCRNIN PVRNNHTGGS ARPAPSDARP QTVLVENPKT LDEKGKLVSN VAVGVTSWKR

Best Arabidopsis Sequence Match ( AT4G20380.7 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.