CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94003	Canola	mitochondrion	94.76	93.78
Bra038804.1-P	Field mustard	cytosol	94.24	92.78
CDX78991	Canola	cytosol	86.91	86.91
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	85.86	84.54
CDX76459	Canola	cytosol	75.92	80.56
KRH43079	Soybean	extracellular	68.59	74.01
KRH59208	Soybean	extracellular	68.06	73.45
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	63.35	72.46
AT4G20380.8	Thale cress	extracellular	76.96	70.0
KRH37706	Soybean	mitochondrion	62.3	68.39
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	56.54	66.67
PGSC0003DMT400054616	Potato	extracellular	60.21	66.09
Os12t0611000-01	Rice	plastid	56.54	62.79
GSMUA_Achr7P00950_001	Banana	mitochondrion	55.5	59.22
KRH12749	Soybean	extracellular	62.3	58.91
TraesCS5D01G059500.1	Wheat	mitochondrion	54.97	58.66
TraesCS5B01G054000.1	Wheat	mitochondrion	54.97	58.66
GSMUA_Achr7P08020_001	Banana	mitochondrion	54.45	58.1
GSMUA_Achr6P31340_001	Banana	cytosol	37.17	57.72
EER91186	Sorghum	extracellular, mitochondrion, peroxisome, plastid	52.88	57.71
Os03t0639600-01	Rice	mitochondrion, plastid	55.5	56.99
TraesCS5A01G376200.1	Wheat	mitochondrion	53.4	56.67
TraesCS5B01G379800.1	Wheat	mitochondrion	53.4	56.67
TraesCS5D01G386200.2	Wheat	mitochondrion	53.4	56.35
Zm00001d033262_P001	Maize	extracellular	54.97	55.26
TraesCS5A01G048900.1	Wheat	cytosol, mitochondrion	54.97	53.3
CDX73255	Canola	extracellular	25.65	53.26
Os08t0130100-01	Rice	cytosol	39.27	51.02
CDY49490	Canola	plastid	63.87	50.62
CDY26902	Canola	endoplasmic reticulum, extracellular	38.22	47.4
OQU79832	Sorghum	mitochondrion	38.74	46.25
TraesCS7A01G310500.1	Wheat	cytosol	31.94	46.21
Zm00001d035195_P001	Maize	mitochondrion	36.13	46.0
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	61.26	45.17
Zm00001d049625_P001	Maize	plastid	27.75	44.92
HORVU7Hr1G074030.2	Barley	cytosol	30.89	44.7
TraesCS7D01G307000.1	Wheat	cytosol	30.37	43.94
HORVU5Hr1G093280.4	Barley	mitochondrion	52.88	43.91
CDY01267	Canola	mitochondrion	15.71	41.1
KXG23966	Sorghum	mitochondrion	54.45	39.85
CDY68066	Canola	plastid	25.13	34.04
CDX76435	Canola	cytosol	26.7	33.12
Zm00001d041474_P001	Maize	mitochondrion	52.36	32.36
CDY31418	Canola	plastid	25.65	20.08

Protein Annotations

EnsemblPlants:CDX98669	EnsemblPlantsGene:GSBRNA2T00106725001	InterPro:Znf_LSD1	PANTHER:PTHR31747	PANTHER:PTHR31747:SF3	PFAM:PF06943
ProteinID:CDX98669	ProteinID:CDX98669.1	SEG:seg	TIGRFAMs:TIGR01053	UniParc:UPI0004EEF11D	MapMan:27.2.1

Description

BnaA03g44540D

Coordinates

chrLK031906:+:578821..580490

Molecular Weight (calculated)

20330.6 Da

IEP (calculated)

8.501

GRAVY (calculated)

-0.219

Length

191 amino acids

Sequence
(BLAST)

001: MQDQLVCHGC RNTLLYPRGA TNVRCALCNT INMVPPHPHP PPPHAHAGMD MAHIVCGGCR TMLMYTRGAS SVRCSCCQTV NLVPATPPTN QPAHVNCGNC
101: RTTLMYPYGA PSVRCAVCQF VTNVNMGNGR VPFPTNLPNG TASPEPMPST STQSTPPSQT QTVVVENPMS VNESGKLVSN VVVGVTTDKK K

Best Arabidopsis Sequence Match ( AT4G20380.7 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.