CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020924.1-P	Field mustard	cytosol	61.11	87.3
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	75.56	81.44
CDX78991	Canola	cytosol	81.11	76.44
CDX98669	Canola	cytosol	80.56	75.92
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	81.11	75.26
CDX94003	Canola	mitochondrion	80.56	75.13
KRH43079	Soybean	extracellular	66.67	67.8
KRH59208	Soybean	extracellular	66.11	67.23
AT4G20380.8	Thale cress	extracellular	77.78	66.67
KRH37706	Soybean	mitochondrion	61.67	63.79
PGSC0003DMT400054616	Potato	extracellular	61.11	63.22
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	55.0	61.11
Os12t0611000-01	Rice	plastid	57.78	60.47
TraesCS5D01G059500.1	Wheat	mitochondrion	56.67	56.98
TraesCS5B01G054000.1	Wheat	mitochondrion	56.67	56.98
GSMUA_Achr7P08020_001	Banana	mitochondrion	56.67	56.98
KRH12749	Soybean	extracellular	62.78	55.94
GSMUA_Achr7P00950_001	Banana	mitochondrion	54.44	54.75
EER91186	Sorghum	extracellular, mitochondrion, peroxisome, plastid	52.78	54.29
Os03t0639600-01	Rice	mitochondrion, plastid	55.56	53.76
GSMUA_Achr6P31340_001	Banana	cytosol	36.11	52.85
TraesCS5B01G379800.1	Wheat	mitochondrion	52.78	52.78
TraesCS5A01G376200.1	Wheat	mitochondrion	52.78	52.78
TraesCS5D01G386200.2	Wheat	mitochondrion	52.78	52.49
TraesCS5A01G048900.1	Wheat	cytosol, mitochondrion	56.67	51.78
CDX73255	Canola	extracellular	26.11	51.09
CDY49490	Canola	plastid	67.78	50.62
Zm00001d033262_P001	Maize	extracellular	53.33	50.53
Os08t0130100-01	Rice	cytosol	41.11	50.34
OQU79832	Sorghum	mitochondrion	41.67	46.88
Zm00001d035195_P001	Maize	mitochondrion	38.89	46.67
Zm00001d049625_P001	Maize	plastid	30.0	45.76
HORVU7Hr1G074030.2	Barley	cytosol	33.33	45.45
TraesCS7A01G310500.1	Wheat	cytosol	33.33	45.45
CDY26902	Canola	endoplasmic reticulum, extracellular	38.89	45.45
TraesCS7D01G307000.1	Wheat	cytosol	32.78	44.7
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	63.33	44.02
HORVU5Hr1G093280.4	Barley	mitochondrion	52.78	41.3
CDY01267	Canola	mitochondrion	16.11	39.73
KXG23966	Sorghum	mitochondrion	53.89	37.16
CDY68066	Canola	plastid	25.56	32.62
Zm00001d041474_P001	Maize	mitochondrion	52.78	30.74
CDX76435	Canola	cytosol	26.11	30.52
CDY31418	Canola	plastid	25.56	18.85

Protein Annotations

EnsemblPlants:CDX76459	EnsemblPlantsGene:GSBRNA2T00126870001	InterPro:Znf_LSD1	PANTHER:PTHR31747	PANTHER:PTHR31747:SF3	PFAM:PF06943
ProteinID:CDX76459	ProteinID:CDX76459.1	SEG:seg	TIGRFAMs:TIGR01053	UniParc:UPI0004EEF79D	MapMan:27.2.1

Description

BnaA08g09410D

Coordinates

chrLK031807:-:1316941..1318515

Molecular Weight (calculated)

19210.4 Da

IEP (calculated)

8.782

GRAVY (calculated)

-0.078

Length

180 amino acids

Sequence
(BLAST)

001: MQDQLVCHGC RNTLLYPRGA TNVRCALCNT VNMIPHHPSP HGMDMAHIVC GGCRTMLMYT RGGTSVRCSC CQTLNLVPAP TPSNQFAHIN CGNCRTTLMY
101: PYGASSVKCA VCQFVTNVNL MGNGRVPNMQ NGAASPRTIS TSTSTPPSKT QTVVVENPMS VNESGKLVSN VVVGVTTCKK

Best Arabidopsis Sequence Match ( AT4G20380.7 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.