Factsheet for Solyc02g069720.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

extracellular 3
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054616	Potato	extracellular	94.44	87.93
KRH59208	Soybean	extracellular	71.6	65.54
KRH43079	Soybean	extracellular	70.37	64.41
KRH37706	Soybean	mitochondrion	64.81	60.34
EER91186	Sorghum	extracellular, mitochondrion, peroxisome, plastid	61.11	56.57
CDX98669	Canola	cytosol	66.67	56.54
Os12t0611000-01	Rice	plastid	59.88	56.4
CDX94003	Canola	mitochondrion	66.67	55.96
Bra038804.1-P	Field mustard	cytosol	66.67	55.67
Bra020924.1-P	Field mustard	cytosol	43.21	55.56
CDX76459	Canola	cytosol	61.11	55.0
CDX78991	Canola	cytosol	64.81	54.97
GSMUA_Achr7P00950_001	Banana	mitochondrion	60.49	54.75
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	65.43	54.64
Os03t0639600-01	Rice	mitochondrion, plastid	62.35	54.3
Zm00001d033262_P001	Maize	extracellular	63.58	54.21
Bra013460.1-P	Field mustard	cytosol	64.2	53.89
TraesCS5B01G054000.1	Wheat	mitochondrion	59.26	53.63
TraesCS5D01G059500.1	Wheat	mitochondrion	58.64	53.07
TraesCS5B01G379800.1	Wheat	mitochondrion	58.64	52.78
TraesCS5A01G376200.1	Wheat	mitochondrion	58.64	52.78
TraesCS5D01G386200.2	Wheat	mitochondrion	58.64	52.49
KRH12749	Soybean	extracellular	64.81	51.98
GSMUA_Achr6P31340_001	Banana	cytosol	37.65	49.59
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	50.62	49.1
Solyc08g077060.2.1	Tomato	plastid	43.83	48.97
TraesCS5A01G048900.1	Wheat	cytosol, mitochondrion	59.26	48.73
AT4G20380.8	Thale cress	extracellular	62.96	48.57
GSMUA_Achr7P08020_001	Banana	mitochondrion	53.09	48.04
Os08t0130100-01	Rice	cytosol	40.74	44.9
TraesCS7A01G310500.1	Wheat	cytosol	36.42	44.7
HORVU7Hr1G074030.2	Barley	cytosol	36.42	44.7
TraesCS7D01G307000.1	Wheat	cytosol	35.8	43.94
Zm00001d035195_P001	Maize	mitochondrion	38.27	41.33
OQU79832	Sorghum	mitochondrion	40.74	41.25
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	65.43	40.93
HORVU5Hr1G093280.4	Barley	mitochondrion	58.02	40.87
Zm00001d049625_P001	Maize	plastid	29.63	40.68
CDY49490	Canola	plastid	57.41	38.59
KXG23966	Sorghum	mitochondrion	59.26	36.78
Zm00001d041474_P001	Maize	mitochondrion	58.02	30.42
Solyc02g078270.2.1	Tomato	nucleus	27.16	11.64

Protein Annotations

MapMan:27.2.1	GO:GO:0000303	GO:GO:0001666	GO:GO:0002240	GO:GO:0006950	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0009605	GO:GO:0009607
GO:GO:0009626	GO:GO:0009628	GO:GO:0009653	GO:GO:0009719	GO:GO:0009862	GO:GO:0009987
GO:GO:0010104	GO:GO:0010310	GO:GO:0010602	GO:GO:0010618	UniProt:K4B7V4	PFAM:PF06943
PANTHER:PTHR31747	PANTHER:PTHR31747:SF3	EnsemblPlantsGene:Solyc02g069720.2	EnsemblPlants:Solyc02g069720.2.1	TIGRFAMs:TIGR01053	UniParc:UPI000276829F
InterPro:Znf_LSD1	SEG:seg	:	:	:	:

Description

Protein LSD1 [Source:Projected from Arabidopsis thaliana (AT4G20380) UniProtKB/Swiss-Prot;Acc:P94077]

Coordinates

chr2:+:39539714..39544161

Molecular Weight (calculated)

16796.4 Da

IEP (calculated)

8.379

GRAVY (calculated)

0.099

Length

162 amino acids

Sequence
(BLAST)

001: MLLYPRGASN VCCAVCNALT PVPPPGMEMA QLICGGCRTL LMHPRGANSV RCSCCHTVNL VPGPNQFAHV YCGNCRMMLM YPCGAPSVKC AVCHYITNVN
101: AGDGRAHAPL NPPNGTATTA SGSSSTAKAR SQNQTVVVQN PMSVDESGKL VSNVVVGVTT TS

Best Arabidopsis Sequence Match ( AT4G20380.7 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.