Factsheet for TraesCS5A01G048900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 4
cytosol 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G054000.1	Wheat	mitochondrion	90.36	99.44
TraesCS5D01G059500.1	Wheat	mitochondrion	89.85	98.88
Os12t0611000-01	Rice	plastid	72.59	83.14
TraesCS5A01G376200.1	Wheat	mitochondrion	61.42	67.22
KRH43079	Soybean	extracellular	56.85	63.28
KRH59208	Soybean	extracellular	56.35	62.71
GSMUA_Achr7P00950_001	Banana	mitochondrion	55.84	61.45
Bra020924.1-P	Field mustard	cytosol	38.07	59.52
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	48.73	59.26
PGSC0003DMT400054616	Potato	extracellular	52.28	59.2
KRH37706	Soybean	mitochondrion	51.78	58.62
CDX76459	Canola	cytosol	51.78	56.67
KXG23966	Sorghum	mitochondrion	74.62	56.32
CDX78991	Canola	cytosol	54.31	56.02
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	54.31	55.15
CDX98669	Canola	cytosol	53.3	54.97
Bra013460.1-P	Field mustard	cytosol	53.81	54.92
Bra038804.1-P	Field mustard	cytosol	53.3	54.12
CDX94003	Canola	mitochondrion	52.79	53.89
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	43.65	51.5
TraesCS1A01G279500.3	Wheat	plastid	38.07	51.37
KRH12749	Soybean	extracellular	52.28	50.99
TraesCS7A01G310500.1	Wheat	cytosol	33.5	50.0
AT4G20380.8	Thale cress	extracellular	51.27	48.1
Zm00001d041474_P001	Maize	mitochondrion	70.56	44.98
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	55.84	42.47
CDY49490	Canola	plastid	49.24	40.25
TraesCS3A01G219500.1	Wheat	nucleus	10.66	3.24

Protein Annotations

EnsemblPlants:TraesCS5A01G048900.1	EnsemblPlantsGene:TraesCS5A01G048900	InterPro:Znf_LSD1	PANTHER:PTHR31747	PANTHER:PTHR31747:SF13	PFAM:PF06943
SEG:seg	TIGRFAMs:TIGR01053	MapMan:27.2.1	:	:	:

Description

No Description!

Coordinates

chr5A:+:44975983..44978705

Molecular Weight (calculated)

20847.6 Da

IEP (calculated)

8.656

GRAVY (calculated)

0.130

Length

197 amino acids

Sequence
(BLAST)

001: MKNYLLLRPD RPGRDFAGMQ SQIVCHGCRS VLLYPRGAPS VCCAVCHAVT SAPPPGMEMA QLICVGCRTL LMYTRNATTV RCSCCDTVNL ARPAPPVNSI
101: AHVNCGQCQT VLMYPYGASS VKCAICNFIT NIGMNTVRPL PPTMHAPNGI SYSVPSTSAP SAQSQNVTVV VENPMTVDDK GKLVSNVVVG VTSGGKK

Best Arabidopsis Sequence Match ( AT4G20380.7 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.