CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37706	Soybean	mitochondrion	78.71	91.38
KRH43079	Soybean	extracellular	70.79	80.79
KRH59208	Soybean	extracellular	70.3	80.23
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	51.98	64.81
CDX78991	Canola	cytosol	60.4	63.87
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	60.4	62.89
CDX76459	Canola	cytosol	55.94	62.78
Bra013460.1-P	Field mustard	cytosol	59.9	62.69
PGSC0003DMT400054616	Potato	extracellular	53.96	62.64
CDX98669	Canola	cytosol	58.91	62.3
Bra038804.1-P	Field mustard	cytosol	58.91	61.34
CDX94003	Canola	mitochondrion	57.92	60.62
Os12t0611000-01	Rice	plastid	51.49	60.47
Bra020924.1-P	Field mustard	cytosol	37.13	59.52
GSMUA_Achr7P00950_001	Banana	mitochondrion	51.98	58.66
TraesCS5D01G059500.1	Wheat	mitochondrion	50.49	56.98
TraesCS5B01G054000.1	Wheat	mitochondrion	50.49	56.98
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	47.03	56.89
AT4G20380.8	Thale cress	extracellular	58.42	56.19
Os03t0639600-01	Rice	mitochondrion, plastid	50.99	55.38
GSMUA_Achr7P08020_001	Banana	mitochondrion	49.01	55.31
EER91186	Sorghum	extracellular, mitochondrion, peroxisome, plastid	47.03	54.29
Zm00001d033262_P001	Maize	extracellular	50.49	53.68
TraesCS5B01G379800.1	Wheat	mitochondrion	47.03	52.78
TraesCS5A01G376200.1	Wheat	mitochondrion	47.03	52.78
TraesCS5D01G386200.2	Wheat	mitochondrion	47.03	52.49
TraesCS5A01G048900.1	Wheat	cytosol, mitochondrion	50.99	52.28
Os08t0130100-01	Rice	cytosol	37.13	51.02
GSMUA_Achr6P31340_001	Banana	cytosol	30.69	50.41
KRH04330	Soybean	plastid	35.64	48.0
KRH77212	Soybean	plastid	34.16	46.94
OQU79832	Sorghum	mitochondrion	37.13	46.88
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	58.91	45.95
KRH58208	Soybean	plastid	27.72	45.53
CDY49490	Canola	plastid	52.97	44.4
Zm00001d035195_P001	Maize	mitochondrion	32.67	44.0
Zm00001d049625_P001	Maize	plastid	25.25	43.22
HORVU7Hr1G074030.2	Barley	cytosol	28.22	43.18
TraesCS7A01G310500.1	Wheat	cytosol	28.22	43.18
TraesCS7D01G307000.1	Wheat	cytosol	27.72	42.42
KXG23966	Sorghum	mitochondrion	53.96	41.76
HORVU5Hr1G093280.4	Barley	mitochondrion	47.03	41.3
KRH50040	Soybean	cytosol	22.28	35.16
Zm00001d041474_P001	Maize	mitochondrion	50.0	32.69

Protein Annotations

EMBL:ACUP02009381	EnsemblPlants:KRH12749	EnsemblPlantsGene:GLYMA_15G192000	EntrezGene:100792570	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:Znf_LSD1	PANTHER:PTHR31747	PANTHER:PTHR31747:SF3	PFAM:PF06943	ProteinID:KRH12749
ProteinID:KRH12749.1	SEG:seg	TIGRFAMs:TIGR01053	TMHMM:TMhelix	UniParc:UPI0006EDB84B	UniProt:A0A0R0G337
MapMan:27.2.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:20840932..20846492

Molecular Weight (calculated)

21884.8 Da

IEP (calculated)

8.547

GRAVY (calculated)

0.275

Length

202 amino acids

Sequence
(BLAST)

001: MFLSHFRQIS FNFIIIIIII SWGFWFMGSQ LVCNGCRNIL VYPRGATNVC CALCNTVTSV PPPGMDMSQL YCGGCTTLLM YTRGATSVRC SCCHTINLVP
101: VLESNQVIHC TNCRTTLMYP YGASSVKCAI CRYITNVSMT NGRLPIPVQR PNGTANSGTV SSTSSSMPHS QSQTVVVENP MSVDSSGKLV SNVVVGVTTE
201: KK

Best Arabidopsis Sequence Match ( AT4G20380.7 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.