CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 2
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43079	Soybean	extracellular	84.48	83.05
KRH59208	Soybean	extracellular	83.91	82.49
KRH12749	Soybean	extracellular	91.38	78.71
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	60.34	64.81
CDX78991	Canola	cytosol	69.54	63.35
PGSC0003DMT400054616	Potato	extracellular	62.64	62.64
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	69.54	62.37
CDX98669	Canola	cytosol	68.39	62.3
Bra013460.1-P	Field mustard	cytosol	68.97	62.18
CDX76459	Canola	cytosol	63.79	61.67
Bra038804.1-P	Field mustard	cytosol	68.39	61.34
CDX94003	Canola	mitochondrion	67.24	60.62
Bra020924.1-P	Field mustard	cytosol	42.53	58.73
GSMUA_Achr7P00950_001	Banana	mitochondrion	60.34	58.66
Os12t0611000-01	Rice	plastid	57.47	58.14
AT4G20380.8	Thale cress	extracellular	68.97	57.14
TraesCS5D01G059500.1	Wheat	mitochondrion	58.05	56.42
TraesCS5B01G054000.1	Wheat	mitochondrion	58.05	56.42
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	54.02	56.29
Os03t0639600-01	Rice	mitochondrion, plastid	59.77	55.91
GSMUA_Achr7P08020_001	Banana	mitochondrion	56.9	55.31
EER91186	Sorghum	extracellular, mitochondrion, peroxisome, plastid	55.17	54.86
TraesCS5B01G379800.1	Wheat	mitochondrion	55.17	53.33
TraesCS5A01G376200.1	Wheat	mitochondrion	55.17	53.33
Zm00001d033262_P001	Maize	extracellular	57.47	52.63
TraesCS5D01G386200.2	Wheat	mitochondrion	54.6	52.49
GSMUA_Achr6P31340_001	Banana	cytosol	36.78	52.03
TraesCS5A01G048900.1	Wheat	cytosol, mitochondrion	58.62	51.78
Os08t0130100-01	Rice	cytosol	42.53	50.34
KRH04330	Soybean	plastid	41.95	48.67
KRH77212	Soybean	plastid	39.66	46.94
OQU79832	Sorghum	mitochondrion	42.53	46.25
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	67.82	45.56
CDY49490	Canola	plastid	62.07	44.81
KRH58208	Soybean	plastid	31.61	44.72
Zm00001d035195_P001	Maize	mitochondrion	37.36	43.33
TraesCS7A01G310500.1	Wheat	cytosol	32.76	43.18
HORVU7Hr1G074030.2	Barley	cytosol	32.76	43.18
TraesCS7D01G307000.1	Wheat	cytosol	32.18	42.42
Zm00001d049625_P001	Maize	plastid	28.16	41.53
HORVU5Hr1G093280.4	Barley	mitochondrion	53.45	40.43
KXG23966	Sorghum	mitochondrion	57.47	38.31
KRH50040	Soybean	cytosol	27.01	36.72
Zm00001d041474_P001	Maize	mitochondrion	54.02	30.42

Protein Annotations

EMBL:ACUP02005492	EnsemblPlants:KRH37706	EnsemblPlantsGene:GLYMA_09G083500	EntrezGene:100776644	InterPro:Znf_LSD1	PANTHER:PTHR31747
PANTHER:PTHR31747:SF3	PFAM:PF06943	ProteinID:KRH37706	ProteinID:KRH37706.1	SEG:seg	TIGRFAMs:TIGR01053
UniParc:UPI000189D212	UniProt:A0A0R4J424	MapMan:27.2.1	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:9997638..10003637

Molecular Weight (calculated)

18501.5 Da

IEP (calculated)

8.488

GRAVY (calculated)

0.092

Length

174 amino acids

Sequence
(BLAST)

001: MRSQLVCNGC RSILVYPRGA TNVCCALCNT ITSVPPPGMD MSQLYCGGCT TLLMYTRGAT SVRCSCCHTI NLVPESNQVI HCANCRTTLM YPYGASSVKC
101: AICCYITNIS MTNGRLSIPV QRPNGTANSG TVSSTSSSMP YSQSQTVVVE NPMSVDSSGK LVRNVVVGVT TDKK

Best Arabidopsis Sequence Match ( AT4G20380.1 )
(BLAST)

001: MQDQLVCHGC RNLLMYPRGA SNVRCALCNT INMVPPPPPP HDMAHIICGG CRTMLMYTRG ASSVRCSCCQ TTNLVPAHSN QVAHAPSSQV AQINCGHCRT
101: TLMYPYGASS VKCAVCQFVT NVNMSNGRVP LPTNRPNGTA CPPSTSTSTP PSQTQTVVVE NPMSVDESGK LVSNVVVGVT TDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.