CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76459	Canola	cytosol	50.62	67.78
CDX78991	Canola	cytosol	51.87	65.44
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	51.87	64.43
CDX94003	Canola	mitochondrion	51.45	64.25
CDX98669	Canola	cytosol	50.62	63.87
KRH43079	Soybean	extracellular	46.47	63.28
KRH59208	Soybean	extracellular	46.06	62.71
KRH37706	Soybean	mitochondrion	44.81	62.07
PGSC0003DMT400054616	Potato	extracellular	44.4	61.49
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	42.32	61.08
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	38.59	57.41
Os12t0611000-01	Rice	plastid	40.25	56.4
GSMUA_Achr7P00950_001	Banana	mitochondrion	40.25	54.19
TraesCS5B01G054000.1	Wheat	mitochondrion	39.83	53.63
TraesCS5D01G059500.1	Wheat	mitochondrion	39.83	53.63
EER91186	Sorghum	extracellular, mitochondrion, peroxisome, plastid	38.59	53.14
GSMUA_Achr7P08020_001	Banana	mitochondrion	39.42	53.07
KRH12749	Soybean	extracellular	44.4	52.97
Zm00001d033262_P001	Maize	extracellular	41.49	52.63
GSMUA_Achr6P31340_001	Banana	cytosol	26.56	52.03
Os03t0639600-01	Rice	mitochondrion, plastid	39.83	51.61
TraesCS5D01G386200.2	Wheat	mitochondrion	38.59	51.38
TraesCS5A01G376200.1	Wheat	mitochondrion	38.17	51.11
TraesCS5B01G379800.1	Wheat	mitochondrion	38.17	51.11
CDX73255	Canola	extracellular	19.5	51.09
Os08t0130100-01	Rice	cytosol	30.29	49.66
TraesCS5A01G048900.1	Wheat	cytosol, mitochondrion	40.25	49.24
OQU79832	Sorghum	mitochondrion	31.12	46.88
Zm00001d049625_P001	Maize	plastid	22.41	45.76
CDY26902	Canola	endoplasmic reticulum, extracellular	29.05	45.45
Zm00001d035195_P001	Maize	mitochondrion	28.22	45.33
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	45.23	42.08
HORVU5Hr1G093280.4	Barley	mitochondrion	39.83	41.74
HORVU7Hr1G074030.2	Barley	cytosol	22.82	41.67
TraesCS7A01G310500.1	Wheat	cytosol	22.82	41.67
TraesCS7D01G307000.1	Wheat	cytosol	22.82	41.67
KXG23966	Sorghum	mitochondrion	41.49	38.31
CDY01267	Canola	mitochondrion	11.2	36.99
CDY68066	Canola	plastid	19.92	34.04
Zm00001d041474_P001	Maize	mitochondrion	40.66	31.72
CDX76435	Canola	cytosol	19.09	29.87
CDY31418	Canola	plastid	19.09	18.85

Protein Annotations

EnsemblPlants:CDY49490	EnsemblPlantsGene:GSBRNA2T00093152001	InterPro:Znf_LSD1	PANTHER:PTHR31747	PANTHER:PTHR31747:SF3	PFAM:PF06943
ProteinID:CDY49490	ProteinID:CDY49490.1	SEG:seg	TIGRFAMs:TIGR01053	UniParc:UPI0004EEA5A2	UniProt:A0A078IF24
MapMan:27.2.1	:	:	:	:	:

Description

BnaC07g18090DBnaC07g18090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IF24]

Coordinates

chrLK032836:+:74984..78591

Molecular Weight (calculated)

25895.6 Da

IEP (calculated)

9.302

GRAVY (calculated)

-0.024

Length

241 amino acids

Sequence
(BLAST)

001: MTPLARSVKL DSSKHHFPFN PVKKSRAPPA RSTAATASAP SDGVIHIVRF SVKFSYGLRD DNGITNIGIR EMQEQLVCRG CRTTLMYPRG AINVCCALCR
101: TINPPQGMDM ANIVCGGCAT MLMYTRSATS VRCSCCQTLN LVPAPSNQTA RINCGHCRII LMYPYGASSV KCAVCQYVTN VHLRNGMAPF SMNRPNVTAS
201: PPTTMPSAST TQTVVVENPM SLDESGKLVS NVVVGVTTAK N

Best Arabidopsis Sequence Match ( AT4G20380.1 )
(BLAST)

001: MQDQLVCHGC RNLLMYPRGA SNVRCALCNT INMVPPPPPP HDMAHIICGG CRTMLMYTRG ASSVRCSCCQ TTNLVPAHSN QVAHAPSSQV AQINCGHCRT
101: TLMYPYGASS VKCAVCQFVT NVNMSNGRVP LPTNRPNGTA CPPSTSTSTP PSQTQTVVVE NPMSVDESGK LVSNVVVGVT TDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.