Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01267 | Canola | mitochondrion | 40.22 | 50.68 |
| EES14592 | Sorghum | plastid | 75.0 | 48.25 |
| TraesCS1D01G278800.2 | Wheat | plastid | 75.0 | 47.26 |
| TraesCS1B01G288600.3 | Wheat | plastid | 75.0 | 47.26 |
| TraesCS1A01G279500.3 | Wheat | plastid | 75.0 | 47.26 |
| CDY26902 | Canola | endoplasmic reticulum, extracellular | 77.17 | 46.1 |
| Os08t0159500-01 | Rice | nucleus | 73.91 | 36.96 |
| Zm00001d049525_P004 | Maize | plastid | 76.09 | 34.83 |
| CDX78991 | Canola | cytosol | 55.43 | 26.7 |
| CDX76435 | Canola | cytosol | 44.57 | 26.62 |
| CDX82760 | Canola | cytosol, extracellular, mitochondrion, plastid | 55.43 | 26.29 |
| CDX76459 | Canola | cytosol | 51.09 | 26.11 |
| CDX98669 | Canola | cytosol | 53.26 | 25.65 |
| CDY68066 | Canola | plastid | 39.13 | 25.53 |
| CDX94003 | Canola | mitochondrion | 53.26 | 25.39 |
| HORVU1Hr1G073170.3 | Barley | plastid | 75.0 | 24.38 |
| CDY31440 | Canola | endoplasmic reticulum, extracellular, plastid | 42.39 | 23.35 |
| CDY49490 | Canola | plastid | 51.09 | 19.5 |
| CDY31418 | Canola | plastid | 44.57 | 16.8 |
Protein Annotations
| EnsemblPlants:CDX73255 | EnsemblPlantsGene:GSBRNA2T00106280001 | GO:A0A078C8W6 | InterPro:Znf_LSD1 | PANTHER:PTHR31747 | PANTHER:PTHR31747:SF1 |
| PFAM:PF06943 | ProteinID:CDX73255 | ProteinID:CDX73255.1 | SignalP:SignalP-noTM | TIGRFAMs:TIGR01053 | TMHMM:TMhelix |
| UniParc:UPI0004EE9301 | MapMan:27.2.1 | : | : | : | : |
Description
BnaC05g28510D
Coordinates
chrLK031798:+:47719..48951
Molecular Weight (calculated)
10027.5 Da
IEP (calculated)
8.330
GRAVY (calculated)
0.612
Length
92 amino acids
Sequence
(BLAST)
(BLAST)
1: MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLALEANQVA HVNCGSCKML LMYQYGARSV KCAVCTFITS VGVILVIFIK RENIDFKSFA NN
001: MPVPLAPYPT PPAPALAPSY NTPPANGSTS GQSQLVCSGC RNLLMYPVGA TSVCCAVCNA VTAVPPPGTE MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV
101: NLALEANQVA HVNCGNCMML LMYQYGARSV KCAVCNFVTS VGVSSLSLSK KIGFKSVAN
101: NLALEANQVA HVNCGNCMML LMYQYGARSV KCAVCNFVTS VGVSSLSLSK KIGFKSVAN
Arabidopsis Description
LOL1lsd one like 1 [Source:TAIR;Acc:AT1G32540]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.