Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d018530_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G32540.1 | Zm00001d018530_P001 | AT5G08330.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73255 | Canola | extracellular | 34.83 | 76.09 |
| EES14592 | Sorghum | plastid | 38.81 | 54.55 |
| Solyc08g077060.2.1 | Tomato | plastid | 39.3 | 54.48 |
| CDY01267 | Canola | mitochondrion | 19.4 | 53.42 |
| TraesCS1D01G278800.2 | Wheat | plastid | 38.81 | 53.42 |
| TraesCS1B01G288600.3 | Wheat | plastid | 38.81 | 53.42 |
| TraesCS1A01G279500.3 | Wheat | plastid | 38.81 | 53.42 |
| PGSC0003DMT400045143 | Potato | plastid | 40.3 | 53.29 |
| GSMUA_Achr7P04710_001 | Banana | plastid | 36.82 | 52.48 |
| KRH04330 | Soybean | plastid | 38.81 | 52.0 |
| KRH77212 | Soybean | plastid | 37.31 | 51.02 |
| GSMUA_AchrUn_... | Banana | plastid | 36.82 | 49.33 |
| Bra010171.1-P | Field mustard | plastid | 37.81 | 48.41 |
| Os08t0159500-01 | Rice | nucleus | 39.3 | 42.93 |
| AT1G32540.1 | Thale cress | extracellular | 39.3 | 42.25 |
| VIT_02s0012g00990.t01 | Wine grape | cytosol, extracellular, plastid | 38.81 | 40.84 |
| KRH58208 | Soybean | plastid | 21.89 | 35.77 |
| GSMUA_Achr3P27560_001 | Banana | extracellular | 36.82 | 35.75 |
| Zm00001d033262_P001 | Maize | extracellular | 29.35 | 31.05 |
| Zm00001d049625_P001 | Maize | plastid | 16.92 | 28.81 |
| HORVU1Hr1G073170.3 | Barley | plastid | 38.81 | 27.56 |
| Zm00001d035195_P001 | Maize | mitochondrion | 19.9 | 26.67 |
| Zm00001d041474_P001 | Maize | mitochondrion | 28.36 | 18.45 |
| Zm00001d044463_P001 | Maize | nucleus | 21.89 | 4.96 |
Protein Annotations
| EnsemblPlants:Zm00001d049525_P004 | EnsemblPlants:Zm00001d049525_T004 | EnsemblPlantsGene:Zm00001d049525 | EntrezGene:100285579 | InterPro:Znf_LSD1 | PANTHER:PTHR31747 |
| PANTHER:PTHR31747:SF1 | PFAM:PF06943 | ProteinID:AQK50700.1 | SEG:seg | TIGRFAMs:TIGR01053 | UniParc:UPI00084484B1 |
| UniProt:A0A1D6PVV3 | MapMan:27.2.1 | : | : | : | : |
Description
LOL1%3B LOL1 isoform 1%3B LOL1 isoform 2
Coordinates
chr4:+:33186410..33189186
Molecular Weight (calculated)
22749.0 Da
IEP (calculated)
9.726
GRAVY (calculated)
-0.167
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGEAAGLCR LNAAGICEAS PSCVRRRIRQ PARQCRFRLL RTQLLRRHSR RPMLPRESSA GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLAMEAN
101: QVAHVNCGNC RMLLMYQYGA RSVKCAVCSF VTSVGVSTQS ILFQKRMQLT NNVFCCRRLP LFRCYSYCKT TCVSHEKQRT NRQVSLYSDL TWCRAEAQQL
201: S
101: QVAHVNCGNC RMLLMYQYGA RSVKCAVCSF VTSVGVSTQS ILFQKRMQLT NNVFCCRRLP LFRCYSYCKT TCVSHEKQRT NRQVSLYSDL TWCRAEAQQL
201: S
001: MHTWKNQIFS DSQFVLLFMG KNCSIIFPEP HLFISHVFII HLNVLFLVKK INKNNLRFVG STSGQSQLVC SGCRNLLMYP VGATSVCCAV CNAVTAVPPP
101: GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLALEAN QVAHVNCGNC MMLLMYQYGA RSVKCAVCNF VTSVGGSTST TDSKFNN
101: GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLALEAN QVAHVNCGNC MMLLMYQYGA RSVKCAVCNF VTSVGGSTST TDSKFNN
Arabidopsis Description
LOL1lsd one like 1 [Source:TAIR;Acc:AT1G32540]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.